Evidence map›Paper›PMID 38565864›Full record

ArticleNature communications2024

Patchy and widespread distribution of bacterial translation arrest peptides associated with the protein localization machinery.

Keigo Fujiwara, Naoko Tsuji, Mayu Yoshida, Hiraku Takada, Shinobu Chiba

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
2.8field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 12 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Keigo FujiwaraFaculty of Life Sciences, Kyoto Sangyo University, Motoyama, Kamigamo, Kita-Ku, Kyoto, 603-8555, Japan. kigfujiwara@cc.kyoto-su.ac.jp.ORCID http://orcid.org/0000-0002-5371-3552
Naoko TsujiFaculty of Life Sciences, Kyoto Sangyo University, Motoyama, Kamigamo, Kita-Ku, Kyoto, 603-8555, Japan.
Mayu YoshidaFaculty of Life Sciences, Kyoto Sangyo University, Motoyama, Kamigamo, Kita-Ku, Kyoto, 603-8555, Japan.
Hiraku TakadaFaculty of Life Sciences, Kyoto Sangyo University, Motoyama, Kamigamo, Kita-Ku, Kyoto, 603-8555, Japan.
Shinobu ChibaFaculty of Life Sciences, Kyoto Sangyo University, Motoyama, Kamigamo, Kita-Ku, Kyoto, 603-8555, Japan. schiba@cc.kyoto-su.ac.jp.ORCID http://orcid.org/0000-0003-3485-3477
Kyoto Sangyo University · JP

Funding

Institute for Fermentation, Osaka (IFO) G-2021-2-063MEXT | Japan Society for the Promotion of Science (JSPS) 19K16044MEXT | Japan Society for the Promotion of Science (JSPS) 20H05926MEXT | Japan Society for the Promotion of Science (JSPS) 21K06053MEXT | Japan Society for the Promotion of Science (JSPS) 21K15020MEXT | Japan Society for the Promotion of Science (JSPS) 23K05017MEXT | Japan Society for the Promotion of Science (JSPS) 26116008
6 · The paper itself

Abstract

Regulatory arrest peptides interact with specific residues on bacterial ribosomes and arrest their own translation. Here, we analyse over 30,000 bacterial genome sequences to identify additional Sec/YidC-related arrest peptides, followed by in vivo and in vitro analyses. We find that Sec/YidC-related arrest peptides show patchy, but widespread, phylogenetic distribution throughout the bacterial domain. Several of the identified peptides contain distinct conserved sequences near the C-termini, but are still able to efficiently stall bacterial ribosomes in vitro and in vivo. In addition, we identify many arrest peptides that share an R-A-P-P-like sequence, suggesting that this sequence might serve as a common evolutionary seed to overcome ribosomal structural differences across species.

Indexed as

Escherichia coli ProteinsProtein BiosynthesisBacterial ProteinsPeptidesPhylogenyRibosomesBacterial ProteinsEscherichia coli ProteinsPeptides

Identifiers

PMID38565864
PMCPMC10987492
OpenAlexW4393396992

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.