Evidence map›Paper›PMID 38565853›Full record

ArticleNature communications2024

Reconstructing the evolution history of networked complex systems.

Junya Wang, Yi-Jiao Zhang, Cong Xu, Jiaze Li, Jiachen Sun, Jiarong Xie, Ling Feng, Tianshou Zhou, Yanqing Hu

Abstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Protein evolution as a complex system.Nature chemical biology · 2025
    Article
  6. Article
  7. Review
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Junya Wang *School of Systems Science and Engineering, Sun Yat-sen University, Guangzhou, 510006, China.
Yi-Jiao Zhang *Department of Statistics and Data Science, College of Science, Southern University of Science and Technology, Shenzhen, 518055, China.ORCID http://orcid.org/0000-0002-9055-5530
Cong Xu *Department of Statistics and Data Science, College of Science, Southern University of Science and Technology, Shenzhen, 518055, China.
Jiaze LiDepartment of Data Analytics and Digitalisation, School of Business and Economics, Maastricht University, Maastricht, 6200MD, The Netherlands.
Jiachen SunTencent Inc., Shenzhen, 518000, China.
Jiarong XieCenter for Computational Communication Research, Beijing Normal University, Zhuhai, 519087, China.ORCID http://orcid.org/0000-0003-2491-5830
Ling FengInstitute of High Performance Computing (IHPC), Agency for Science, Technology and Research (A*STAR), Singapore, 138632, Singapore.ORCID http://orcid.org/0000-0001-6578-2558
Tianshou ZhouSchool of Mathematics, Sun Yat-sen University, Guangzhou, 510275, China.ORCID http://orcid.org/0000-0002-0797-0531
Yanqing HuDepartment of Statistics and Data Science, College of Science, Southern University of Science and Technology, Shenzhen, 518055, China. yanqing.hu.sc@qq.com.ORCID http://orcid.org/0000-0003-0653-0259

Funding

National Natural Science Foundation of China (National Science Foundation of China) 12275118
6 · The paper itself

Abstract

The evolution processes of complex systems carry key information in the systems' functional properties. Applying machine learning algorithms, we demonstrate that the historical formation process of various networked complex systems can be extracted, including protein-protein interaction, ecology, and social network systems. The recovered evolution process has demonstrations of immense scientific values, such as interpreting the evolution of protein-protein interaction network, facilitating structure prediction, and particularly revealing the key co-evolution features of network structures such as preferential attachment, community structure, local clustering, degree-degree correlation that could not be explained collectively by previous theories. Intriguingly, we discover that for large networks, if the performance of the machine learning model is slightly better than a random guess on the pairwise order of links, reliable restoration of the overall network formation process can be achieved. This suggests that evolution history restoration is generally highly feasible on empirical networks.

Identifiers

PMID38565853
PMCPMC10987487

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.