Evidence map›Paper›PMID 38565583›Full record

ArticleScientific reports2024

A quest for cytosolic sequons and their functions.

Manthan Desai, Syed Rafid Chowdhury, Bingyun Sun

Abstract read
In one paragraph

Article in Scientific reports, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Manthan DesaiDepartment of Molecular Biology and Biochemistry, Simon Fraser University, Burnaby, BC, Canada.
Syed Rafid ChowdhuryDepartment of Computing Science, Simon Fraser University, Burnaby, BC, Canada.
Bingyun SunDepartment of Molecular Biology and Biochemistry, Simon Fraser University, Burnaby, BC, Canada. bingyun_sun@sfu.ca.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Evolution shapes protein sequences for their functions. Here, we studied the moonlighting functions of the N-linked sequon NXS/T, where X is not P, in human nucleocytosolic proteins. By comparing membrane and secreted proteins in which sequons are well known for N-glycosylation, we discovered that cyto-sequons can participate in nucleic acid binding, particularly in zinc finger proteins. Our global studies further discovered that sequon occurrence is largely proportional to protein length. The contribution of sequons to protein functions, including both N-glycosylation and nucleic acid binding, can be regulated through their density as well as the biased usage between NXS and NXT. In proteins where other PTMs or structural features are rich, such as phosphorylation, transmembrane ɑ-helices, and disulfide bridges, sequon occurrence is scarce. The information acquired here should help understand the relationship between protein sequence and function and assist future protein design and engineering.

Indexed as

Nucleic AcidsProteinsAmino Acid SequenceGlycosylationHumansPhosphorylationNucleic AcidsProteinsAsx turnsMembrane protein topologyN-glycosylationPosttranslational modificationsProtein-DNA bindingProtein structure and functionSequonsTransmembrane domainsZinc finger proteinsβ-turns

Identifiers

PMID38565583
PMCPMC10987669

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.