Evidence map›Paper›PMID 38564329›Full record

ArticleChembiochem : a European journal of chemical biology2024

Bile Salt Hydrolase Activity-Based Probes for Monitoring Gut Microbial Bile Acid Metabolism.

Lin Han, Raymond Xu, Amanda N Conwell, Sola Takahashi, Bibudha Parasar, Pamela V Chang

Abstract read
In one paragraph

Article in Chembiochem : a European journal of chemical biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Lin HanDepartment of Chemistry and Chemical Biology.ORCID 0000-0002-2614-8447
Raymond XuDepartment of Microbiology and Immunology.
Amanda N ConwellDepartment of Microbiology and Immunology.
Sola TakahashiDepartment of Microbiology.
Bibudha ParasarDepartment of Chemistry and Chemical Biology.
Pamela V ChangDepartment of Chemistry and Chemical Biology.ORCID 0000-0003-3819-9994

Funding

Activity-based protein profiling of gut microbiota-associated bile acid metabolismR35GM133501 · NIGMS · CORNELL UNIVERSITY · PI Pamela Vivian Chang · 2019 to 2026
$2.8M
Beckman Young Investigator Award (to P.V.C.) from the Arnold and Mabel Beckman FoundationNIGMS NIH HHS R35 GM133501NIH R35 Maximizing Investigators' Research Award for Early Stage Investigators R35GM133501NSF CHE-1531632
6 · The paper itself

Abstract

Bile acids are bioactive metabolites that are biotransformed into secondary bile acids by the gut microbiota, a vast consortium of microbes that inhabit the intestines. The first step in intestinal secondary bile acid metabolism is carried out by a critical enzyme, bile salt hydrolase (BSH), that catalyzes the gateway reaction that precedes all subsequent microbial metabolism of these important metabolites. As gut microbial metabolic activity is difficult to probe due to the complex nature of the gut microbiome, approaches are needed to profile gut microbiota-associated enzymes such as BSH. Here, we develop a panel of BSH activity-based probes (ABPs) to determine how changes in diurnal rhythmicity of gut microbiota-associated metabolism affects BSH activity and substrate preference. This panel of covalent probes enables determination of BSH activity and substrate specificity from multiple gut anerobic bacteria derived from the human and mouse gut microbiome. We found that both gut microbiota-associated BSH activity and substrate preference is rhythmic, likely due to feeding patterns of the mice. These results indicate that this ABP-based approach can be used to profile changes in BSH activity in physiological and disease states that are regulated by circadian rhythms.

Indexed as

AmidohydrolasesBile Acids and SaltsGastrointestinal MicrobiomeAnimalsBacteriaCircadian RhythmHumansMiceMice, Inbred C57BLMolecular ProbesSubstrate SpecificityAmidohydrolasesBile Acids and Saltscholoylglycine hydrolaseMolecular ProbesActivity-based probesAzidesBile acidsClick chemistryGut microbiome

Identifiers

PMID38564329
PMCPMC11102598

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.