Evidence map›Paper›PMID 38561377›Full record

ArticleScientific reports2024

Insights from bioinformatics analysis reveal that lipopolysaccharide induces activation of chemokine-related signaling pathways in human nasal epithelial cells.

Shaolin Tan, Yuelong Gu, Ying Zhu, Chunyu Luo, Zhipeng Li, Hai Lin, Weitian Zhang

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.7field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 3 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Shaolin Tan *Postgraduate Training Base of Shanghai Sixth People's Hospital, Jinzhou Medical University, Shanghai, China.
Yuelong Gu *Department of Otolaryngology-Head and Neck Surgery & Allergy Center, Shanghai Sixth People's Hospital Affiliated to Shanghai Jiao Tong University School of Medicine, Shanghai, China.
Ying ZhuDepartment of Otolaryngology-Head and Neck Surgery & Allergy Center, Shanghai Sixth People's Hospital Affiliated to Shanghai Jiao Tong University School of Medicine, Shanghai, China.
Chunyu LuoDepartment of Otolaryngology-Head and Neck Surgery & Allergy Center, Shanghai Sixth People's Hospital Affiliated to Shanghai Jiao Tong University School of Medicine, Shanghai, China.
Zhipeng LiDepartment of Otolaryngology-Head and Neck Surgery & Allergy Center, Shanghai Sixth People's Hospital Affiliated to Shanghai Jiao Tong University School of Medicine, Shanghai, China.
Hai LinDepartment of Otolaryngology-Head and Neck Surgery & Allergy Center, Shanghai Sixth People's Hospital Affiliated to Shanghai Jiao Tong University School of Medicine, Shanghai, China. hailin@sjtu.edu.cn.
Weitian ZhangDepartment of Otolaryngology-Head and Neck Surgery & Allergy Center, Shanghai Sixth People's Hospital Affiliated to Shanghai Jiao Tong University School of Medicine, Shanghai, China. drzhangwt@163.com.
Shanghai Jiao Tong University · CNJinzhou Medical University · CNShanghai Sixth People's Hospital · CN

Funding

Clinical Science and Technology Innovation Project of Shanghai Shen-Kang Hospital Management Center SHDC12020129National Natural Science Foundation of China No. 81870700National Natural Science Foundation of China No. 82000951National Natural Science Foundation of China No. 82071014National Natural Science Foundation of China No.82271137Science and Technology Innovation Action Plan of Science and Technology Commission of Shanghai Municipality No. 19411950700Shanghai Top-Priority Research Center Construction Project 2023ZZ02008
6 · The paper itself

Abstract

Lipopolysaccharide (LPS) is known to elicit a robust immune response. This study aimed to investigate the impact of LPS on the transcriptome of human nasal epithelial cells (HNEpC). HNEpC were cultured and stimulated with LPS (1 μg/mL) or an equivalent amount of normal culture medium. Subsequently, total RNA was extracted, purified, and sequenced using next-generation RNA sequencing technology. Differentially expressed genes (DEGs) were identified and subjected to functional enrichment analysis. A protein-protein interaction (PPI) network of DEGs was constructed, followed by Ingenuity Pathway Analysis (IPA) to identify molecular pathways influenced by LPS exposure on HNEpC. Validation of key genes was performed using quantitative real-time PCR (qRT-PCR). A total of 97 DEGs, comprising 48 up-regulated genes and 49 down-regulated genes, were identified. Results from functional enrichment analysis, PPI, and IPA indicated that DEGs were predominantly enriched in chemokine-related signaling pathways. Subsequent qRT-PCR validation demonstrated significant upregulation of key genes in these pathways in LPS-treated HNEpC compared to control cells. In conclusion, LPS intervention profoundly altered the transcriptome of HNEpC, potentially exacerbating inflammatory responses through the activation of chemokine-related signaling pathways.

Indexed as

Gene Expression ProfilingLipopolysaccharidesChemokinesComputational BiologyEpithelial CellsHumansSignal TransductionTranscriptomeChemokinesLipopolysaccharides

Identifiers

PMID38561377
PMCPMC10984988
OpenAlexW4393376903

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.