Evidence map›Paper›PMID 38561334›Full record

ArticleNature communications2024

Loss-of-function mutation in PRMT9 causes abnormal synapse development by dysregulation of RNA alternative splicing.

Lei Shen, Xiaokuang Ma, Yuanyuan Wang, Zhihao Wang, Yi Zhang, Hoang Quoc Hai Pham, Xiaoqun Tao, Yuehua Cui, Jing Wei, Dimitri Lin and 9 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
3.3field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 14 citations in OpenAlex.

  1. Review
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  6. HDAC11 Regulates RNA Splicing via De-Fatty Acylation of SF3B2.bioRxiv : the preprint server for biology · 2026
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 5 institutions in 2 countries.

Lei Shen *Department of Cancer Genetics and Epigenetics, Beckman Research Institute, City of Hope Cancer Center, Duarte, CA, 91010, USA.
Xiaokuang Ma *Basic Medical Sciences, University of Arizona College of Medicine-Phoenix, Phoenix, AZ, 85004, USA.ORCID http://orcid.org/0000-0001-7900-6779
Yuanyuan Wang *Bioinformatics Interdepartmental Graduate Program, University of California, Los Angeles, CA, 90095, USA.
Zhihao WangDepartment of Cancer Genetics and Epigenetics, Beckman Research Institute, City of Hope Cancer Center, Duarte, CA, 91010, USA.
Yi ZhangDepartment of Cancer Genetics and Epigenetics, Beckman Research Institute, City of Hope Cancer Center, Duarte, CA, 91010, USA.
Hoang Quoc Hai PhamDepartment of Cancer Genetics and Epigenetics, Beckman Research Institute, City of Hope Cancer Center, Duarte, CA, 91010, USA.ORCID http://orcid.org/0000-0002-9044-5008
Xiaoqun TaoDepartment of Cancer Genetics and Epigenetics, Beckman Research Institute, City of Hope Cancer Center, Duarte, CA, 91010, USA.
Yuehua CuiBasic Medical Sciences, University of Arizona College of Medicine-Phoenix, Phoenix, AZ, 85004, USA.
Jing WeiBasic Medical Sciences, University of Arizona College of Medicine-Phoenix, Phoenix, AZ, 85004, USA.ORCID http://orcid.org/0000-0001-6312-1270
Dimitri LinDepartment of Cancer Genetics and Epigenetics, Beckman Research Institute, City of Hope Cancer Center, Duarte, CA, 91010, USA.
Tharindumala AbeywanadaDepartment of Cancer Genetics and Epigenetics, Beckman Research Institute, City of Hope Cancer Center, Duarte, CA, 91010, USA.
Swanand HardikarDepartment of Epigenetics and Molecular Carcinogenesis, The University of Texas MD Anderson Cancer Center, Houston, TX, 77030, USA.
Levon HalabelianStructural Genomics Consortium, University of Toronto, Toronto, ON, Canada.ORCID http://orcid.org/0000-0003-4361-3619
Noah SmithCenter for Computational and Genomic Medicine, The Children's Hospital of Philadelphia, Philadelphia, PA, 19104, USA.
Taiping ChenDepartment of Epigenetics and Molecular Carcinogenesis, The University of Texas MD Anderson Cancer Center, Houston, TX, 77030, USA.ORCID http://orcid.org/0000-0002-2524-6440
Dalia Barsyte-LovejoyStructural Genomics Consortium, University of Toronto, Toronto, ON, Canada.ORCID http://orcid.org/0000-0002-6560-9621
Shenfeng QiuBasic Medical Sciences, University of Arizona College of Medicine-Phoenix, Phoenix, AZ, 85004, USA. sqiu@arizona.edu.ORCID http://orcid.org/0000-0002-0730-1602
Yi XingCenter for Computational and Genomic Medicine, The Children's Hospital of Philadelphia, Philadelphia, PA, 19104, USA. xingyi@chop.edu.ORCID http://orcid.org/0000-0001-9257-7613
Yanzhong YangDepartment of Cancer Genetics and Epigenetics, Beckman Research Institute, City of Hope Cancer Center, Duarte, CA, 91010, USA. yyang@coh.org.ORCID http://orcid.org/0000-0002-1937-4526
City of Hope · USUniversity of Arizona · USChildren's Hospital of Philadelphia · USThe University of Texas MD Anderson Cancer Center · USUniversity of Toronto · CA

Funding

Prefrontal-Accumbens Neurocircuits Mediating Response to Social StressR01MH128192 · NIMH · UNIVERSITY OF ARIZONA · PI Deveroux Ferguson, Shenfeng Qiu · 2022 to 2026
$3.0M
VARIATION AND REGULATION OF ALTERNATIVE SPLICING IN HUMAN TRANSCRIPTOMESR01GM088342 · NIGMS · UNIVERSITY OF IOWA · PI XING, YI · 2010 to 2020
$2.9M
Regulation of N6-methyladenosine (m6A) deposition by arginine methylationR01GM133850 · NIGMS · BECKMAN RESEARCH INSTITUTE/CITY OF HOPE · PI YANG, YANZHONG · 2019 to 2023
$2.1M
Biological function and regulation of PRMT9 in synapse developmentR01NS132083 · NINDS · BECKMAN RESEARCH INSTITUTE/CITY OF HOPE · PI Yanzhong Yang · 2024 to 2026
$1.8M
Computational tools and resources to study alternative splicing and mRNA isoform variationR56HG012310 · NHGRI · CHILDREN'S HOSP OF PHILADELPHIA · PI XING, YI · 2022 to 2022
$569k
Rescue of synaptic pathology in an Alzheimer's mouse model by enhancing MET receptor tyrosine kinase signalingR21AG078700 · NIA · UNIVERSITY OF ARIZONA · PI QIU, SHENFENG · 2022 to 2022
$422k
NHGRI NIH HHS R56 HG012310NIA NIH HHS R21 AG078700NIGMS NIH HHS R01 GM088342NIGMS NIH HHS R01 GM133850NIMH NIH HHS R01 MH128192NINDS NIH HHS R01 NS132083
6 · The paper itself

Abstract

Protein arginine methyltransferase 9 (PRMT9) is a recently identified member of the PRMT family, yet its biological function remains largely unknown. Here, by characterizing an intellectual disability associated PRMT9 mutation (G189R) and establishing a Prmt9 conditional knockout (cKO) mouse model, we uncover an important function of PRMT9 in neuronal development. The G189R mutation abolishes PRMT9 methyltransferase activity and reduces its protein stability. Knockout of Prmt9 in hippocampal neurons causes alternative splicing of ~1900 genes, which likely accounts for the aberrant synapse development and impaired learning and memory in the Prmt9 cKO mice. Mechanistically, we discover a methylation-sensitive protein-RNA interaction between the arginine 508 (R508) of the splicing factor 3B subunit 2 (SF3B2), the site that is exclusively methylated by PRMT9, and the pre-mRNA anchoring site, a cis-regulatory element that is critical for RNA splicing. Additionally, using human and mouse cell lines, as well as an SF3B2 arginine methylation-deficient mouse model, we provide strong evidence that SF3B2 is the primary methylation substrate of PRMT9, thus highlighting the conserved function of the PRMT9/SF3B2 axis in regulating pre-mRNA splicing.

Indexed as

Alternative SplicingRNAAnimalsArginineF-Box ProteinsHumansMiceMice, KnockoutMutationProtein-Arginine N-MethyltransferasesRNA PrecursorsRNA SplicingArginineF-Box ProteinsFBXO11 protein, humanProtein-Arginine N-MethyltransferasesRNARNA Precursors

Identifiers

PMID38561334
PMCPMC10984984
OpenAlexW4393381323

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.