Evidence map›Paper›PMID 38560995›Full record

ArticleNature2024

Complexity of avian evolution revealed by family-level genomes.

Josefin Stiller, Shaohong Feng, Al-Aabid Chowdhury, Iker Rivas-González, David A Duchêne, Qi Fang, Yuan Deng, Alexey Kozlov, Alexandros Stamatakis, Santiago Claramunt and 42 more

Abstract read
In one paragraph

Article in Nature, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 139 papers.

0numbers the graph read from it
0cells of the map it votes in
139citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

139 citing papers in PubMed.

  1. Article
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  6. DNA-bound avian R2 non-LTR retrotransposon protein recruits a second R2 protein for genome-protective second-strand nicking.Proceedings of the National Academy of Sciences of the United States of America · 2026
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  12. Review
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  17. CAMUS: scalable phylogenetic network estimation.Bioinformatics (Oxford, England) · 2026
    Article
  18. Article
  19. Article
  20. Genomic Distortion of Jawed Vertebrate Phylogeny.bioRxiv : the preprint server for biology · 2026
    Article

79 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

52 authors.

Josefin StillerSection for Ecology and Evolution, Department of Biology, University of Copenhagen, Copenhagen, Denmark. josefin.stiller@bio.ku.dk.ORCID 0000-0001-6009-9581
Shaohong FengCenter for Evolutionary & Organismal Biology, Liangzhu Laboratory & Women's Hospital, Zhejiang University School of Medicine, Hangzhou, China.ORCID 0000-0002-2462-7348
Al-Aabid ChowdhurySchool of Life and Environmental Sciences, University of Sydney, Sydney, New South Wales, Australia.
Iker Rivas-GonzálezBioinformatics Research Centre, Aarhus University, Aarhus, Denmark.ORCID 0000-0002-0515-0628
David A DuchêneCenter for Evolutionary Hologenomics, The Globe Institute, University of Copenhagen, Copenhagen, Denmark.ORCID 0000-0002-5479-1974
Qi FangBGI Research, Shenzhen, China.ORCID 0000-0002-9181-8689
Yuan DengBGI Research, Shenzhen, China.
Alexey KozlovComputational Molecular Evolution Group, Heidelberg Institute for Theoretical Studies, Heidelberg, Germany.ORCID 0000-0001-7394-2718
Alexandros StamatakisComputational Molecular Evolution Group, Heidelberg Institute for Theoretical Studies, Heidelberg, Germany.ORCID 0000-0003-0353-0691
Santiago ClaramuntDepartment of Ecology and Evolutionary Biology, University of Toronto, Toronto, Ontario, Canada.ORCID 0000-0002-8926-5974
Jacqueline M T NguyenCollege of Science and Engineering, Flinders University, Adelaide, South Australia, Australia.ORCID 0000-0002-3076-0006
Simon Y W HoSchool of Life and Environmental Sciences, University of Sydney, Sydney, New South Wales, Australia.ORCID 0000-0002-0361-2307
Brant C FairclothDepartment of Biological Sciences and Museum of Natural Science, Louisiana State University, Baton Rouge, LA, USA.ORCID 0000-0002-1943-0217
Julia HaagComputational Molecular Evolution Group, Heidelberg Institute for Theoretical Studies, Heidelberg, Germany.ORCID 0000-0002-7493-3917
Peter HoudeDepartment of Biology, New Mexico State University, Las Cruces, NM, USA.ORCID 0000-0003-4541-5974
Joel CracraftDepartment of Ornithology, American Museum of Natural History, New York, NY, USA.ORCID 0000-0001-7587-8342
Metin BalabanBioinformatics and Systems Biology Graduate Program, University of California San Diego, La Jolla, CA, USA.
Uyen MaiComputer Science and Engineering, University of California San Diego, La Jolla, CA, USA.
Guangji ChenBGI Research, Wuhan, China.ORCID 0000-0002-9441-1155
Rongsheng GaoBGI Research, Wuhan, China.
Chengran ZhouBGI Research, Wuhan, China.ORCID 0000-0002-9468-5973
Yulong XieCenter for Evolutionary & Organismal Biology, Liangzhu Laboratory & Women's Hospital, Zhejiang University School of Medicine, Hangzhou, China.
Zijian HuangCenter for Evolutionary & Organismal Biology, Liangzhu Laboratory & Women's Hospital, Zhejiang University School of Medicine, Hangzhou, China.
Zhen CaoDepartment of Computer Science, Rice University, Houston, TX, USA.
Zhi YanDepartment of Computer Science, Rice University, Houston, TX, USA.ORCID 0000-0003-2433-5553
Huw A OgilvieDepartment of Computer Science, Rice University, Houston, TX, USA.ORCID 0000-0003-1589-6885
Luay NakhlehDepartment of Computer Science, Rice University, Houston, TX, USA.ORCID 0000-0003-3288-6769
Bent LindowNatural History Museum Denmark, University of Copenhagen, Copenhagen, Denmark.ORCID 0000-0002-1864-4221
Benoit MorelComputational Molecular Evolution Group, Heidelberg Institute for Theoretical Studies, Heidelberg, Germany.
Jon FjeldsåNatural History Museum Denmark, University of Copenhagen, Copenhagen, Denmark.ORCID 0000-0003-0790-3600
Peter A HosnerNatural History Museum Denmark, University of Copenhagen, Copenhagen, Denmark.ORCID 0000-0001-7499-6224
Rute R da FonsecaCenter for Global Mountain Biodiversity, Globe Institute, University of Copenhagen, Copenhagen, Denmark.ORCID 0000-0002-2805-4698
Bent PetersenCenter for Evolutionary Hologenomics, The Globe Institute, University of Copenhagen, Copenhagen, Denmark.ORCID 0000-0002-2472-8317
Joseph A TobiasDepartment of Life Sciences, Imperial College London, Silwood Park, Ascot, UK.ORCID 0000-0003-2429-6179
Tamás SzékelyMilner Centre for Evolution, University of Bath, Bath, UK.ORCID 0000-0003-2093-0056
Jonathan David KennedyCenter for Macroecology, Evolution, and Climate, The Globe Institute, University of Copenhagen, Copenhagen, Denmark.
Andrew Hart ReeveNatural History Museum Denmark, University of Copenhagen, Copenhagen, Denmark.ORCID 0000-0001-5233-6030
Andras LikerHUN-REN-PE Evolutionary Ecology Research Group, University of Pannonia, Veszprém, Hungary.
Martin StervanderBird Group, Natural History Museum, Tring, UK.ORCID 0000-0002-6139-7828
Agostinho AntunesCIIMAR/CIMAR, Interdisciplinary Centre of Marine and Environmental Research, University of Porto, Porto, Portugal.ORCID 0000-0002-1328-1732
Dieter Thomas TietzeNABU, Berlin, Germany.ORCID 0000-0001-6868-227X
Mads F BertelsenCentre for Zoo and Wild Animal Health, Copenhagen Zoo, Frederiksberg, Denmark.
Fumin LeiKey Laboratory of Zoological Systematics and Evolution, Institute of Zoology, Chinese Academy of Sciences, Beijing, China.ORCID 0000-0001-9920-8167
Carsten RahbekCenter for Global Mountain Biodiversity, Globe Institute, University of Copenhagen, Copenhagen, Denmark.ORCID 0000-0003-4585-0300
Gary R GravesCenter for Macroecology, Evolution, and Climate, The Globe Institute, University of Copenhagen, Copenhagen, Denmark.ORCID 0000-0003-1406-5246
Mikkel H SchierupBioinformatics Research Centre, Aarhus University, Aarhus, Denmark.ORCID 0000-0002-5028-1790
Tandy WarnowUniversity of Illinois Urbana-Champaign, Champaign, IL, USA.
Edward L BraunDepartment of Biology, University of Florida, Gainesville, FL, USA.ORCID 0000-0003-1643-5212
M Thomas P GilbertCenter for Evolutionary Hologenomics, The Globe Institute, University of Copenhagen, Copenhagen, Denmark.ORCID 0000-0002-5805-7195
Erich D JarvisVertebrate Genome Lab, The Rockefeller University, New York, NY, USA.
Siavash MirarabUniversity of California, San Diego, San Diego, CA, USA. smirarabbaygi@ucsd.edu.ORCID 0000-0001-5410-1518
Guojie ZhangCenter for Evolutionary & Organismal Biology, Liangzhu Laboratory & Women's Hospital, Zhejiang University School of Medicine, Hangzhou, China. guojiezhang@zju.edu.cn.ORCID 0000-0001-6860-1521

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Despite tremendous efforts in the past decades, relationships among main avian lineages remain heavily debated without a clear resolution. Discrepancies have been attributed to diversity of species sampled, phylogenetic method and the choice of genomic regions

Indexed as

BirdsEvolution, MolecularGenomePhylogenyAnimalsBrainExtinction, BiologicalFemaleGenomicsMalePopulation Density

Identifiers

PMID38560995
PMCPMC11111414

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.