Evidence map›Paper›PMID 38559265›Full record

ArticlebioRxiv : the preprint server for biology2024

Unveiling the Microbial Realm with VEBA 2.0: A modular bioinformatics suite for end-to-end genome-resolved prokaryotic, (micro)eukaryotic, and viral multi-omics from either short- or long-read sequencing.

Josh L Espinoza, Allan Phillips, Melanie B Prentice, Gene S Tan, Pauline L Kamath, Karen G Lloyd, Chris L Dupont

Open access · greenAbstract readPreprint
PubMed Full text at PMC Publisher
In one paragraph

Article in bioRxiv : the preprint server for biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 3 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Josh L EspinozaDepartment of Environment and Sustainability, J. Craig Venter Institute, La Jolla, CA 92037, USA.ORCID 0000-0003-3447-3845
Allan PhillipsDepartment of Environment and Sustainability, J. Craig Venter Institute, La Jolla, CA 92037, USA.
Melanie B PrenticeSchool of Food and Agriculture, University of Maine, Orono, ME 04469, USA.
Gene S TanDepartment of Genomic Medicine and Infectious Diseases, J. Craig Venter Institute, La Jolla, CA 92037, USA.
Pauline L KamathSchool of Food and Agriculture, University of Maine, Orono, ME 04469, USA.
Karen G LloydMicrobiology Department, University of Tennessee, Knoxville, TN 37917, USA.ORCID 0000-0003-0914-6375
Chris L DupontDepartment of Environment and Sustainability, J. Craig Venter Institute, La Jolla, CA 92037, USA.
J. Craig Venter Institute · USUniversity of Maine · USUniversity of Tennessee at Knoxville · US

Funding

Identifying Influenza Virus Infection Severity and Outcome Signatures Through Artificial Intelligence-driven AnalysesR01AI170111 · NIAID · J. CRAIG VENTER INSTITUTE, INC. · PI Christopher L. Dupont · 2022 to 2026
$3.0M
Genomic diversity of Candida bloodstream infectionsR21AI160098 · NIAID · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI NGUYEN, M. HONG THI · 2021 to 2022
$499k
NIAID NIH HHS R01 AI170111NIAID NIH HHS R21 AI160098
6 · The paper itself

Abstract

The microbiome is a complex community of microorganisms, encompassing prokaryotic (bacterial and archaeal), eukaryotic, and viral entities. This microbial ensemble plays a pivotal role in influencing the health and productivity of diverse ecosystems while shaping the web of life. However, many software suites developed to study microbiomes analyze only the prokaryotic community and provide limited to no support for viruses and microeukaryotes. Previously, we introduced the

Identifiers

PMID38559265
PMCPMC10979853
OpenAlexW4392662892

What OpenQuestion holds

Textmetadata
LicenceCC BY-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.