Evidence map›Paper›PMID 38558536›Full record

ArticleCancer medicine2024

Characterization and impact of non-canonical WNT signaling on outcomes of urothelial carcinoma.

Margaret Meagher, Harris Krause, Andrew Elliott, Alex Farrell, Emmanuel S Antonarakis, Bruno Bastos, Elisabeth I Heath, Christina Jamieson, Tyler F Stewart, Aditya Bagrodia and 4 more

Open access · goldAbstract read
In one paragraph

Article in Cancer medicine, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.6field-weighted citation impact, top 36% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 1 citations in OpenAlex.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 4 institutions in 1 country.

Margaret MeagherDepartment of Urology, UC San Diego School of Medicine, La Jolla, California, USA.
Harris KrauseCaris Life Sciences, Phoenix, Arizona, USA.ORCID 0000-0003-3481-8364
Andrew ElliottCaris Life Sciences, Phoenix, Arizona, USA.
Alex FarrellCaris Life Sciences, Phoenix, Arizona, USA.ORCID 0000-0001-5702-3906
Emmanuel S AntonarakisDivision of Hematology, Oncology, and Transplantation, University of Minnesota, Minnesota, USA.
Bruno BastosMiami Cancer Institute, Miami, Florida, USA.
Elisabeth I HeathDepartment of Medicine, UC San Diego School of Medicine, La Jolla, California, USA.
Christina JamiesonDepartment of Urology, UC San Diego School of Medicine, La Jolla, California, USA.
Tyler F StewartDepartment of Urology, UC San Diego School of Medicine, La Jolla, California, USA.
Aditya BagrodiaDepartment of Urology, UC San Diego School of Medicine, La Jolla, California, USA.
Chadi NabhanCaris Life Sciences, Phoenix, Arizona, USA.
Matt OberleyCaris Life Sciences, Phoenix, Arizona, USA.
Rana R McKayDepartment of Urology, UC San Diego School of Medicine, La Jolla, California, USA.ORCID 0000-0002-0581-7963
Amirali SalmasiDepartment of Urology, UC San Diego School of Medicine, La Jolla, California, USA.ORCID 0000-0002-3884-6322
University of California San Diego · USCaris Life Sciences (United States) · USUniversity of Minnesota · USWayne State University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundNon-canonical WNT family (WNT5A pathway) signaling via WNT5A through ROR1 and its partner, ROR2, or Frizzled2 (FZD2) is linked to processes driving tumorigenesis and therapy resistance. We utilized a large dataset of urothelial carcinoma (UC) tumors to characterize non-canonical WNT signaling through WNT5A, ROR1, ROR2, or FZD2 expression.

methodsNextGen Sequencing of DNA (592 genes or WES)/RNA (WTS) was performed for 4125 UC tumors submitted to Caris Life Sciences. High and low expression of WNT5A, ROR1, ROR2, and FZD2 was defined as ≥ top and <bottom quartile of transcripts per million (TPM), respectively. Gene expression profiles were analyzed for a transcriptional signature predictive of response to immunotherapy. Mann-Whitney U and X2/Fisher Exact tests were applied where appropriate, with p-values adjusted for multiple comparisons (p < 0.05). Real-world overall survival (OS) was obtained from insurance claims data.

resultsWNT5A pathway gene expression varied significantly between primary versus metastatic sites: WNT5A (25.2 vs. 16.8 TPM), FZD2 (3.2 vs. 4.05), ROR1 (1.7 vs. 2.1), and ROR2 (2.4 vs. 2.6) p < 0.05 for all. Comparison of high- and low-expression subgroups revealed variation in the prevalence of TP53, FGFR3, and RB1 pathogenic mutations, as well as increasing T cell-inflamed scores as expression of the target gene increased. High gene expression for ROR2 (HR 1.31, 95% CI 1.15-1.50, p < 0.001) and FZD2 (HR 1.16, 95% CI 1.02-1.32, p = 0.024) was associated with worse OS.

conclusionDistinct genomic and immune landscapes for the four investigated WNT5A pathway components were observed in patients with UC. External validation studies are needed.

Indexed as

Carcinoma, Transitional CellUrinary Bladder NeoplasmsHumansReceptor Tyrosine Kinase-like Orphan ReceptorsWnt-5a ProteinWnt ProteinsWnt Signaling PathwayReceptor Tyrosine Kinase-like Orphan ReceptorsWnt-5a ProteinWnt ProteinsFZD2Non‐canonicalRORUrothelial carcinomaWNT5AWNT signaling

Identifiers

PMID38558536
PMCPMC10983807
OpenAlexW4393377726

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.