Evidence map›Paper›PMID 38555443›Full record

ArticleAnnals of clinical microbiology and antimicrobials2024

An isothermal CRISPR- based lateral flow assay for detection of Neisseria meningitidis.

Dao Thi Huyen, Julien Reboud, Dao Thanh Quyen, Jonathan M Cooper, Thirumalaisamy P Velavan, Ngo Tat Trung, Le Huu Song

Open access · goldAbstract read
In one paragraph

Article in Annals of clinical microbiology and antimicrobials, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
4.8field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 14 citations in OpenAlex.

  1. Review
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  6. A novel LAMP-based assay for the identification ofJournal of clinical microbiology · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 3 countries.

Dao Thi HuyenVietnamese - German Center for Medical Research (VG-CARE), 108 Military Central Hospital, Nr 1, Tran Hung Dao Street, Hai Ba Trung Dist., Hanoi, 10000, Vietnam.
Julien ReboudJames Watt School of Engineering, University of Glasgow, Glasgow, G12 8QQ, UK.
Dao Thanh QuyenVietnamese - German Center for Medical Research (VG-CARE), 108 Military Central Hospital, Nr 1, Tran Hung Dao Street, Hai Ba Trung Dist., Hanoi, 10000, Vietnam.
Jonathan M CooperJames Watt School of Engineering, University of Glasgow, Glasgow, G12 8QQ, UK.
Thirumalaisamy P VelavanVietnamese - German Center for Medical Research (VG-CARE), 108 Military Central Hospital, Nr 1, Tran Hung Dao Street, Hai Ba Trung Dist., Hanoi, 10000, Vietnam.
Ngo Tat TrungVietnamese - German Center for Medical Research (VG-CARE), 108 Military Central Hospital, Nr 1, Tran Hung Dao Street, Hai Ba Trung Dist., Hanoi, 10000, Vietnam. tatrungngo@gmail.com.
Le Huu SongVietnamese - German Center for Medical Research (VG-CARE), 108 Military Central Hospital, Nr 1, Tran Hung Dao Street, Hai Ba Trung Dist., Hanoi, 10000, Vietnam. songlh@benhvien108.vn.
108 Military Central Hospital · VNUniversity of Glasgow · GBUniversity of Tübingen · DEVietnamese - German Center of Excellence in Medical Research · VN

Funding

PAN-ASEAN Coalition for Epidemic and Outbreak Preparedness (PACE-UP) DAAD-57592343Vietnamese Ministry of National Defence 364/2020/HD-NCKHCN
6 · The paper itself

Abstract

backgroundNeisseria meningitidis can cause life-threatening meningococcal meningitis and meningococcemia. Old standard microbiological results from CSF/blood cultures are time consuming. This study aimed to combine the sensitivity of loop-mediated isothermal nucleic acid amplification (LAMP) with the specificity of CRISPR/Cas12a cleavage to demonstrate a reliable diagnostic assay for rapid detection of N. meningitidis.

methodsA total of n = 139 samples were collected from patients with suspected meningococcal disease and were used for evaluation. The extracted DNA was subjected to qualitative real-time PCR, targeting capsular transporter gene (ctrA) of N. meningitidis. LAMP-specific primer pairs, also targeting the ctrA, were designed and the LAMP products were subjected to CRISPR/Cas12 cleavage reaction. the readout was on a lateral flow strip. Sensitivity, specificity, positive predictive value (PPV) and negative predictive value (NPV) of LAMP-CRISPR/Cas was compared with real-time PCR assays. The limit of detection (LOD) was established with serial dilutions of the target N. meningitidis DNA and calculated by Probit regression analysis.

resultsSix LAMP assay-specific primers were developed targeting the ctrA gene of N. meningitidis, which is conserved in all meningococcal serogroups. The LAMP primers did not amplify DNA from other bacterial DNA tested, showing 100% specificity. The use of 0.4 M betaine increased the sensitivity and stability of the reaction. LAMP-CRISPR/Cas detected meningococcal serogroups (B, C, W). The assay showed no cross-reactivity and was specific for N. meningitidis. The LOD was 74 (95% CI: 47-311) N. meningitidis copies. The LAMP-CRISPR/Cas performed well compared to the gold standard. In the 139 samples from suspected patients, the sensitivity and specificity of the test were 91% and 99% respectively.

conclusionThis developed and optimized method can complement for the available gold standard for the timely diagnosis of meningococcal meningitis and meningococcemia.

Indexed as

Meningitis, MeningococcalMeningococcal InfectionsNeisseria meningitidisSepsisDNA, BacterialHumansSensitivity and SpecificityDNA, BacterialCRISPR-CasCSFLAMPMeningococcal serogroupsN. Meningitidis

Identifiers

PMID38555443
PMCPMC10981803
OpenAlexW4393337794

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.