Evidence map›Paper›PMID 38553566›Full record

ArticleScientific reports2024

Cooperative nucleic acid binding by Poly ADP-ribose polymerase 1.

Manana Melikishvili, Michael G Fried, Yvonne N Fondufe-Mittendorf

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
1.7field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 6 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 1 country.

Manana MelikishviliDepartment of Epigenetics, Van Andel Institute, Grand Rapids, MI, 49503, USA.
Michael G FriedCenter for Structural Biology, Department of Molecular and Cellular Biochemistry, University of Kentucky, Lexington, KY, 40536, USA. michael.fried@uky.edu.
Yvonne N Fondufe-MittendorfDepartment of Epigenetics, Van Andel Institute, Grand Rapids, MI, 49503, USA. y.fondufemittendorf@vai.org.
Van Andel Institute · USUniversity of Kentucky · US

Funding

Molecular mechanisms of iAs-mediated carcinogenesis through the lens of histone H2B variantsR01ES034253 · NIEHS · VAN ANDEL RESEARCH INSTITUTE · PI Yvonne Nsokika Fondufe-Mittendorf · 2022 to 2026
$3.3M
Molecular Underpinnings in the Establishment of an Oncogenic 3D Genome inResponse to Environmental Arsenic ExposureR01ES031846 · NIEHS · VAN ANDEL RESEARCH INSTITUTE · PI FONDUFE-MITTENDORF, YVONNE NSOKIKA · 2020 to 2024
$2.7M
circSATB2, a novel regulator of arsenic-induced carcinogenesisR01ES036051 · NIEHS · VAN ANDEL RESEARCH INSTITUTE · PI Yvonne Nsokika Fondufe-Mittendorf · 2024 to 2026
$1.9M
NIEHS NIH HHS R01 ES031846NIEHS NIH HHS R01 ES034253NIEHS NIH HHS R01ES034253NIEHS NIH HHS R01 ES036051
6 · The paper itself

Abstract

Poly (ADP)-ribose polymerase 1 (PARP1) is an abundant nuclear protein well-known for its role in DNA repair yet also participates in DNA replication, transcription, and co-transcriptional splicing, where DNA is undamaged. Thus, binding to undamaged regions in DNA and RNA is likely a part of PARP1's normal repertoire. Here we describe analyses of PARP1 binding to two short single-stranded DNAs, a single-stranded RNA, and a double stranded DNA. The investigations involved comparing the wild-type (WT) full-length enzyme with mutants lacking the catalytic domain (∆CAT) or zinc fingers 1 and 2 (∆Zn1∆Zn2). All three protein types exhibited monomeric characteristics in solution and formed saturated 2:1 complexes with single-stranded T

Indexed as

ChromatinPoly(ADP-ribose) PolymerasesAdenosine Diphosphate RiboseDNADNA RepairOligonucleotidesPoly (ADP-Ribose) Polymerase-1RNAAdenosine Diphosphate RiboseChromatinDNAOligonucleotidesPoly (ADP-Ribose) Polymerase-1Poly(ADP-ribose) PolymerasesRNA

Identifiers

PMID38553566
PMCPMC10980755
OpenAlexW4393305148

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.