Evidence map›Paper›PMID 38553446›Full record

ArticleNature communications2024

Correlating fluorescence microscopy, optical and magnetic tweezers to study single chiral biopolymers such as DNA.

Jack W Shepherd, Sebastien Guilbaud, Zhaokun Zhou, Jamieson A L Howard, Matthew Burman, Charley Schaefer, Adam Kerrigan, Clare Steele-King, Agnes Noy, Mark C Leake

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
4.1field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 12 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. Article
  5. Article
  6. Geometry of Braided DNA Dictates Supercoiling Partition.bioRxiv : the preprint server for biology · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 2 countries.

Jack W Shepherd *School of Physics, Engineering and Technology, University of York, York, YO10 5DD, England.
Sebastien Guilbaud *School of Physics, Engineering and Technology, University of York, York, YO10 5DD, England.
Zhaokun Zhou *Guangdong Provincial Key Lab of Robotics and Intelligent System, Shenzhen Institute of Advanced Technology, Chinese Academy of Sciences, Shenzhen, China.
Jamieson A L Howard *School of Physics, Engineering and Technology, University of York, York, YO10 5DD, England.
Matthew BurmanSchool of Physics, Engineering and Technology, University of York, York, YO10 5DD, England.
Charley SchaeferSchool of Physics, Engineering and Technology, University of York, York, YO10 5DD, England.ORCID http://orcid.org/0000-0002-6925-0185
Adam KerriganThe York-JEOL Nanocentre, University of York, York, YO10 5BR, England.ORCID http://orcid.org/0000-0001-8222-841X
Clare Steele-KingBioscience Technology Facility, University of York, York, YO10 5DD, England.
Agnes NoySchool of Physics, Engineering and Technology, University of York, York, YO10 5DD, England.ORCID http://orcid.org/0000-0003-0673-8949
Mark C LeakeSchool of Physics, Engineering and Technology, University of York, York, YO10 5DD, England. mark.leake@york.ac.uk.ORCID http://orcid.org/0000-0002-1715-1249
University of York · GBBioscience (China) · CNChinese Academy of Sciences · CN

Funding

Leverhulme Trust RPG-2017-1340Leverhulme Trust RPG-2019-156RCUK | Biotechnology and Biological Sciences Research Council (BBSRC) BB/R001235/1RCUK | Biotechnology and Biological Sciences Research Council (BBSRC) BB/W000555/)RCUK | Engineering and Physical Sciences Research Council (EPSRC) EP/N027639/1RCUK | Engineering and Physical Sciences Research Council (EPSRC) EP/R029407/1RCUK | Engineering and Physical Sciences Research Council (EPSRC) EP/R513386/1RCUK | Engineering and Physical Sciences Research Council (EPSRC) EP/T022205/1).
6 · The paper itself

Abstract

Biopolymer topology is critical for determining interactions inside cell environments, exemplified by DNA where its response to mechanical perturbation is as important as biochemical properties to its cellular roles. The dynamic structures of chiral biopolymers exhibit complex dependence with extension and torsion, however the physical mechanisms underpinning the emergence of structural motifs upon physiological twisting and stretching are poorly understood due to technological limitations in correlating force, torque and spatial localization information. We present COMBI-Tweez (Combined Optical and Magnetic BIomolecule TWEEZers), a transformative tool that overcomes these challenges by integrating optical trapping, time-resolved electromagnetic tweezers, and fluorescence microscopy, demonstrated on single DNA molecules, that can controllably form and visualise higher order structural motifs including plectonemes. This technology combined with cutting-edge MD simulations provides quantitative insight into complex dynamic structures relevant to DNA cellular processes and can be adapted to study a range of filamentous biopolymers.

Indexed as

DNAMechanical PhenomenaBiopolymersMagnetic PhenomenaMicroscopy, FluorescenceOptical TweezersBiopolymersDNA

Identifiers

PMID38553446
PMCPMC10980717
OpenAlexW4393317621

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.