Evidence map›Paper›PMID 38551342›Full record

ArticleJournal of bacteriology2024

Alternate routes to mnm

Marshall Jaroch, Guangxin Sun, Ho-Ching Tiffany Tsui, Colbie Reed, Jingjing Sun, Marko Jörg, Malcolm E Winkler, Kelly C Rice, Agnieszka Dziergowska, Troy A Stich and 3 more

Open access · greenAbstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Journal of bacteriology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
1.9field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 8 citations in OpenAlex.

  1. Compendium of RNA modifications for bacterial stress adaptation.Microbiology and molecular biology reviews : MMBR · 2026
    Review
  2. Article
  3. ThebioRxiv : the preprint server for biology · 2026
    Article
  4. Article
  5. Review
  6. Article
  7. tRNA modifying enzymes MnmE and MnmG are essential forbioRxiv : the preprint server for biology · 2025
    Article
  8. Mapping the tRNA modification landscape ofFrontiers in microbiology · 2024
    Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

13 authors at 5 institutions in 3 countries.

Marshall Jaroch *Department of Microbiology and Cell Science, University of Florida, Gainesville, Florida, USA.
Guangxin Sun *Department of Biological Engineering, Massachusetts Institute of Technology, Cambridge, Massachusetts, USA.
Ho-Ching Tiffany TsuiDepartment of Biology, Indiana University Bloomington, Bloomington, Indiana, USA.ORCID 0000-0003-0849-874X
Colbie ReedDepartment of Microbiology and Cell Science, University of Florida, Gainesville, Florida, USA.
Jingjing SunDepartment of Biological Engineering, Massachusetts Institute of Technology, Cambridge, Massachusetts, USA.
Marko JörgDepartment of Microbiology and Cell Science, University of Florida, Gainesville, Florida, USA.
Malcolm E WinklerDepartment of Biology, Indiana University Bloomington, Bloomington, Indiana, USA.ORCID 0000-0002-1482-2588
Kelly C RiceDepartment of Microbiology and Cell Science, University of Florida, Gainesville, Florida, USA.ORCID 0000-0003-1335-4409
Agnieszka DziergowskaInstitute of Organic Chemistry, Lodz University of Technology, Łódź, Poland.ORCID 0000-0002-8888-380X
Troy A StichDepartment of Chemistry, Wake Forest University, Winston-Salem, North Carolina, USA.
Peter C DedonDepartment of Biological Engineering, Massachusetts Institute of Technology, Cambridge, Massachusetts, USA.
Patricia C Dos SantosDepartment of Chemistry, Wake Forest University, Winston-Salem, North Carolina, USA.ORCID 0000-0002-3364-0931
Valérie de Crécy-LagardDepartment of Microbiology and Cell Science, University of Florida, Gainesville, Florida, USA.ORCID 0000-0002-9955-3785
University of Florida · USSingapore-MIT Alliance for Research and Technology · SGIndiana University Bloomington · USWake Forest University · USLodz University of Technology · PL

Funding

Synthesis and function of Queuosine in BacteriaR01GM070641 · NIGMS · UNIVERSITY OF FLORIDA · PI DE CRECY-LAGARD, VALERIE A · 2006 to 2023
$5.3M
New Regulatory Interactions and Circuits that Mediate the Dynamics, Homeostasis, and Stress Responses of Peptidoglycan Synthesis in the Superbug Streptococcus pneumoniaeR35GM131767 · NIGMS · TRUSTEES OF INDIANA UNIVERSITY · PI MALCOLM E. WINKLER · 2019 to 2026
$4.8M
Translational regulation in exposure biology: Xenobiotic-induced reprograming oftRNA modifications and selective translation of codon-biased response genes in rat and humanmodelsR01ES026856 · NIEHS · SUNY POLYTECHNIC INSTITUTE · PI Thomas J Begley, Peter C Dedon · 2016 to 2026
$3.9M
Translational regulation during cigarette smoking-induced reprogramming of the tRNA epitranscriptome, in vitro and in a mouse smoking modelR01ES031529 · NIEHS · STATE UNIVERSITY OF NEW YORK AT ALBANY · PI BEGLEY, THOMAS J · 2020 to 2024
$1.9M
Translational Control of ROS ManagementR01ES024615 · NIEHS · SUNY POLYTECHNIC INSTITUTE · PI BEGLEY, THOMAS J · 2014 to 2018
$1.8M
NIEHS NIH HHS R01 ES024615NIEHS NIH HHS R01 ES026856NIEHS NIH HHS R01 ES031529NIGMS NIH HHS R01 GM070641NIGMS NIH HHS R35 GM131767
6 · The paper itself

Abstract

The wobble bases of tRNAs that decode split codons are often heavily modified. In bacteria, tRNA

Indexed as

Escherichia coli K12RNA, TransferBacteriaGram-Positive BacteriaHumansMethylationRNA, Transfercomparative genomicsmnm5s2UMnmLMnmMrSAMsequence similarity networktRNA modificationYtqAYtqB

Identifiers

PMID38551342
PMCPMC11025329
OpenAlexW4393317921

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.