Evidence map›Paper›PMID 38549066›Full record

ArticleBMC genomics2024

Transcriptome disclosure of hormones inducing stigma exsertion in Nicotiana tabacum by corolla shortening.

Xiaoquan Zhang, Juxu Li, Xuexia Xing, Hongchen Li, Songtao Zhang, Jianbo Chang, Fengjie Wei, Yongfeng Zhang, Jinhui Huang, Xuelin Zhang and 1 more

Abstract read
In one paragraph

Article in BMC genomics, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Xiaoquan ZhangCollege of Tobacco Science, Henan Agricultural University, 450046, Zhengzhou, China.
Juxu LiCollege of Tobacco Science, Henan Agricultural University, 450046, Zhengzhou, China.
Xuexia XingHenan Provincial Branch of China National Tobacco Corporation, 450018, Zhengzhou, China.
Hongchen LiSanmenxia Branch of Henan Provincial Tobacco Corporation, 472000, Sanmenxia, China.
Songtao ZhangCollege of Tobacco Science, Henan Agricultural University, 450046, Zhengzhou, China.
Jianbo ChangSanmenxia Branch of Henan Provincial Tobacco Corporation, 472000, Sanmenxia, China.
Fengjie WeiHenan Provincial Branch of China National Tobacco Corporation, 450018, Zhengzhou, China.
Yongfeng ZhangShangluo Branch of Shanxi provincial Tobacco Company, 726000, Shangluo, China.
Jinhui HuangShangluo Branch of Shanxi provincial Tobacco Company, 726000, Shangluo, China. 150679152@qq.com.
Xuelin ZhangCollege of Agronomy, Henan Agricultural University, 450046, Zhengzhou, China. xuelinzhang1998@163.com.
Zhaojun WangCollege of Tobacco Science, Henan Agricultural University, 450046, Zhengzhou, China. zjwang@henau.edu.cn.

Funding

Key Scientific and Technological Project of Henan Tobacco Company 2021410000240025Key Scientific and Technological Project of Henan Tobacco Company HNYJSCX202201Scientific and Technological Project of Sanmenxia Tobacco Company 2023411200200008XScientific and Technological Project of Shangluo Tobacco Company 2021611000270040
6 · The paper itself

Abstract

backgroundStigma exsertion is an essential agricultural trait that can promote cross-pollination to improve hybrid seed production efficiency. However, the molecular mechanism controlling stigma exsertion remains unknown.

resultsIn this study, the Nicotiana tabacum cv. K326 and its two homonuclear-heteroplasmic lines, MSK326 (male-sterile) and MSK326SE (male-sterile and stigma exserted), were used to investigate the mechanism of tobacco stigma exsertion. A comparison of the flowers between the three lines showed that the stigma exsertion of MSK326SE was mainly due to corolla shortening. Therefore, the corollas of the three lines were sampled and presented for RNA-seq analysis, which found 338 candidate genes that may cause corolla shortening. These genes were equally expressed in K326 and MSK326, but differentially expressed in MSK326SE. Among these 338 genes, 15 were involved in hormone synthesis or signal transduction pathways. Consistently, the content of auxin, dihydrozeatin, gibberellin, and jasmonic acid was significantly decreased in the MSK326SE corolla, whereas abscisic acid levels were significantly increased. Additionally, seven genes involved in cell division, cell cycle, or cell expansion were identified. Protein-protein interaction network analysis identified 45 nodes and 79 protein interactions, and the largest module contained 20 nodes and 52 protein interactions, mainly involved in the hormone signal transduction and pathogen defensive pathways. Furthermore, a putative hub gene coding a serine/threonine-protein kinase was identified for the network.

conclusionsOur results suggest that hormones may play a key role in regulating tobacco stigma exsertion induced by corolla shortening.

Indexed as

NicotianaTranscriptomeDisclosureFlowersHormonesIndoleacetic AcidsHormonesIndoleacetic AcidsCorollaNicotiana tabacumPlant hormonesRNA-seq analysisStigma exsertion

Identifiers

PMID38549066
PMCPMC10976690

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.