Evidence map›Paper›PMID 38549059›Full record

ArticleBMC genomics2024

Comparative genomic analysis of the Growth-Regulating Factors-Interacting Factors (GIFs) in six Salicaceae species and functional analysis of PeGIF3 reveals their regulatory role in Populus heteromorphic leaves.

Yuqi Yang, Jianhao Sun, Chen Qiu, Peipei Jiao, Houling Wang, Zhihua Wu, Zhijun Li

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
1.2field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 2 citations in OpenAlex.

  1. Comprehensive Identification ofInternational journal of molecular sciences · 2025
    Article
  2. The Identification and Characterization of theInternational journal of molecular sciences · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 1 country.

Yuqi Yang *Key Laboratory of Biological Resource Protection and Utilization of Tarim Basin, Xinjiang Production and Construction Group, 843300, Alar, China.
Jianhao Sun *Key Laboratory of Biological Resource Protection and Utilization of Tarim Basin, Xinjiang Production and Construction Group, 843300, Alar, China.
Chen Qiu *Key Laboratory of Biological Resource Protection and Utilization of Tarim Basin, Xinjiang Production and Construction Group, 843300, Alar, China.
Peipei JiaoKey Laboratory of Biological Resource Protection and Utilization of Tarim Basin, Xinjiang Production and Construction Group, 843300, Alar, China.
Houling WangCollege of Biological Sciences and Technology, Beijing Forestry University, 100083, Beijing, China.
Zhihua WuCollege of Life Sciences, Zhejiang Normal University, 321004, Jinhua, China. zhuawu@zjnu.edu.cn.
Zhijun LiKey Laboratory of Biological Resource Protection and Utilization of Tarim Basin, Xinjiang Production and Construction Group, 843300, Alar, China. lizhijun0202@126.com.
Tarim University · CNXinjiang Production and Construction Corps · CNBeijing Forestry University · CNZhejiang Normal University · CN

Funding

Biological Safety and Genetic Resources Management Project of the Science and Technology Development Center of the National Forestry and Grassland Administration, KJZXSA202303Natural Science Foundation of China 32371838Xinjiang Production and Construction Corps Regional Innovation Guidance Program project 2021BB010
6 · The paper itself

Abstract

backgroundThe growth-regulating factor-interacting factor (GIF) gene family plays a vital role in regulating plant growth and development, particularly in controlling leaf, seed, and root meristem homeostasis. However, the regulatory mechanism of heteromorphic leaves by GIF genes in Populus euphratica as an important adaptative trait of heteromorphic leaves in response to desert environment remains unknown.

resultsThis study aimed to identify and characterize the GIF genes in P. euphratica and other five Salicaceae species to investigate their role in regulating heteromorphic leaf development. A total of 27 GIF genes were identified and characterized across six Salicaceae species (P. euphratica, Populus pruinose, Populus deltoides, Populus trichocarpa, Salix sinopurpurea, and Salix suchowensis) at the genome-wide level. Comparative genomic analysis among these species suggested that the expansion of GIFs may be derived from the specific Salicaceae whole-genome duplication event after their divergence from Arabidopsis thaliana. Furthermore, the expression data of PeGIFs in heteromorphic leaves, combined with functional information on GIF genes in Arabidopsis, indicated the role of PeGIFs in regulating the leaf development of P. euphratica, especially PeGIFs containing several cis-acting elements associated with plant growth and development. By heterologous expression of the PeGIF3 gene in wild-type plants (Col-0) and atgif1 mutant of A. thaliana, a significant difference in leaf expansion along the medial-lateral axis, and an increased number of leaf cells, were observed between the overexpressed plants and the wild type.

conclusionPeGIF3 enhances leaf cell proliferation, thereby resulting in the expansion of the central-lateral region of the leaf. The findings not only provide global insights into the evolutionary features of Salicaceae GIFs but also reveal the regulatory mechanism of PeGIF3 in heteromorphic leaves of P. euphratica.

Indexed as

ArabidopsisPopulusSalicaceaeSalixGene Expression Regulation, PlantGenomicsPlant LeavesGIF genesHeteromorphic leavesPopulus EuphraticaRegulatory functionSalicaceae

Identifiers

PMID38549059
PMCPMC10976704
OpenAlexW4393270654

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.