Evidence map›Paper›PMID 38549017›Full record

ArticleMethods in molecular biology (Clifton, N.J.)2024

Nontargeted Identification of D-Amino Acid-Containing Peptides Through Enzymatic Screening, Chiral Amino Acid Analysis, and LC-MS.

Samuel Okyem, Elena V Romanova, Hua-Chia Tai, James W Checco, Jonathan V Sweedler

Abstract read
In one paragraph

Article in Methods in molecular biology (Clifton, N.J.), 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Review
  3. A novel series of metazoan L/D peptide isomerases.The Journal of biological chemistry · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Samuel OkyemDepartment of Chemistry and Beckman Institute for Advanced Science and Technology, University of Illinois at Urbana-Champaign, Urbana, IL, USA.
Elena V RomanovaDepartment of Chemistry and Beckman Institute for Advanced Science and Technology, University of Illinois at Urbana-Champaign, Urbana, IL, USA.
Hua-Chia TaiDepartment of Chemistry and Beckman Institute for Advanced Science and Technology, University of Illinois at Urbana-Champaign, Urbana, IL, USA.
James W CheccoDepartment of Chemistry, University of Nebraska-Lincoln, Lincoln, NE, USA.
Jonathan V SweedlerDepartment of Chemistry and Beckman Institute for Advanced Science and Technology, University of Illinois at Urbana-Champaign, Urbana, IL, USA. jsweedle@illinois.edu.

Funding

The UIUC Neuroproteomics Center on Cell-Cell SignalingP30DA018310 · NIDA · UNIVERSITY OF ILLINOIS URBANA-CHAMPAIGN · PI Jonathan V. Sweedler · 2004 to 2026
$24.9M
SUBCELLULAR CHARACTERIZATION OF NEUROTRANSMITTERSR01NS031609 · NINDS · UNIVERSITY OF ILLINOIS URBANA-CHAMPAIGN · PI SWEEDLER, JONATHAN V. · 1998 to 2022
$6.2M
NIDA NIH HHS P30 DA018310NINDS NIH HHS R01 NS031609
6 · The paper itself

Abstract

D-amino acid-containing peptides (DAACPs) in animals are a class of bioactive molecules formed via the posttranslational modification of peptides consisting of all-L-amino acid residues. Amino acid residue isomerization greatly impacts the function of the resulting DAACP. However, because isomerization does not change the peptide's mass, this modification is difficult to detect by most mass spectrometry-based peptidomic approaches. Here we describe a method for the identification of DAACPs that can be used to systematically survey peptides extracted from a tissue sample in a nontargeted manner.

Indexed as

Amino AcidsLiquid Chromatography-Mass SpectrometryAnimalsChromatography, LiquidPeptidesTandem Mass SpectrometryAmino AcidsPeptidesBioactive peptidesChiralityd-amino acid-containing peptidesPeptide isomerizationPosttranslational modifications

Identifiers

PMID38549017
PMCPMC11034756

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.