Evidence map›Paper›PMID 38548811›Full record

ArticleCommunications biology2024

Pan-cancer analyses suggest kindlin-associated global mechanochemical alterations.

Debojyoti Chowdhury, Ayush Mistry, Debashruti Maity, Riti Bhatia, Shreyansh Priyadarshi, Simran Wadan, Soham Chakraborty, Shubhasis Haldar

Open access · goldAbstract read
In one paragraph

Article in Communications biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
1.0field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 3 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Debojyoti Chowdhury *Department of Chemical and Biological Sciences, S.N. Bose National Centre for Basic Sciences, Kolkata, West Bengal, 700106, India. debojyoti.chowdhury@bose.res.in.ORCID 0000-0003-3358-165X
Ayush Mistry *Department of Biology, Trivedi School of Biosciences, Ashoka University, Sonepat, Haryana, 131029, India.
Debashruti MaityDepartment of Chemical and Biological Sciences, S.N. Bose National Centre for Basic Sciences, Kolkata, West Bengal, 700106, India.
Riti BhatiaDepartment of Biology, Trivedi School of Biosciences, Ashoka University, Sonepat, Haryana, 131029, India.
Shreyansh PriyadarshiDepartment of Biology, Trivedi School of Biosciences, Ashoka University, Sonepat, Haryana, 131029, India.ORCID 0000-0002-6230-4574
Simran WadanDepartment of Biology, Trivedi School of Biosciences, Ashoka University, Sonepat, Haryana, 131029, India.
Soham ChakrabortyDepartment of Biology, Trivedi School of Biosciences, Ashoka University, Sonepat, Haryana, 131029, India.
Shubhasis HaldarDepartment of Chemical and Biological Sciences, S.N. Bose National Centre for Basic Sciences, Kolkata, West Bengal, 700106, India. shubhasis.haldar@bose.res.in.ORCID 0000-0002-4304-5570
Ashoka University · INS.N. Bose National Centre for Basic Sciences · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Kindlins serve as mechanosensitive adapters, transducing extracellular mechanical cues to intracellular biochemical signals and thus, their perturbations potentially lead to cancer progressions. Despite the kindlin involvement in tumor development, understanding their genetic and mechanochemical characteristics across different cancers remains elusive. Here, we thoroughly examined genetic alterations in kindlins across more than 10,000 patients with 33 cancer types. Our findings reveal cancer-specific alterations, particularly prevalent in advanced tumor stage and during metastatic onset. We observed a significant co-alteration between kindlins and mechanochemical proteome in various tumors through the activation of cancer-related pathways and adverse survival outcomes. Leveraging normal mode analysis, we predicted structural consequences of cancer-specific kindlin mutations, highlighting potential impacts on stability and downstream signaling pathways. Our study unraveled alterations in epithelial-mesenchymal transition markers associated with kindlin activity. This comprehensive analysis provides a resource for guiding future mechanistic investigations and therapeutic strategies targeting the roles of kindlins in cancer treatment.

Indexed as

Membrane ProteinsNeoplasm ProteinsNeoplasmsHumansMembrane ProteinsNeoplasm Proteins

Identifiers

PMID38548811
PMCPMC10978987
OpenAlexW4393270433

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.