Evidence map›Paper›PMID 38548728›Full record

ArticleNature communications2024

Genetic control of DNA methylation is largely shared across European and East Asian populations.

Alesha A Hatton, Fei-Fei Cheng, Tian Lin, Ren-Juan Shen, Jie Chen, Zhili Zheng, Jia Qu, Fan Lyu, Sarah E Harris, Simon R Cox and 9 more

Abstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed, 2 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 2 syntheses or guidelines pooled it.

  1. Identification ofFrontiers in immunology · 2026
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors.

Alesha A HattonInstitute for Molecular Bioscience, The University of Queensland, Brisbane, QLD, 4072, Australia.ORCID http://orcid.org/0000-0003-3564-4052
Fei-Fei ChengInstitute for Molecular Bioscience, The University of Queensland, Brisbane, QLD, 4072, Australia.
Tian LinInstitute for Molecular Bioscience, The University of Queensland, Brisbane, QLD, 4072, Australia.ORCID http://orcid.org/0000-0002-5981-1911
Ren-Juan ShenBeijing Institute of Ophthalmology, Beijing Tongren Hospital, Capital Medical University, 100008, Beijing, China.
Jie ChenSchool of Ophthalmology & Optometry, Wenzhou Medical University, Wenzhou, 325027, China.
Zhili ZhengInstitute for Molecular Bioscience, The University of Queensland, Brisbane, QLD, 4072, Australia.ORCID http://orcid.org/0000-0003-2102-221X
Jia QuSchool of Ophthalmology & Optometry, Wenzhou Medical University, Wenzhou, 325027, China.
Fan LyuSchool of Ophthalmology & Optometry, Wenzhou Medical University, Wenzhou, 325027, China.
Sarah E HarrisLothian Birth Cohorts, Department of Psychology, University of Edinburgh, Edinburgh, EH8 9JZ, UK.ORCID http://orcid.org/0000-0002-4941-5106
Simon R CoxLothian Birth Cohorts, Department of Psychology, University of Edinburgh, Edinburgh, EH8 9JZ, UK.ORCID http://orcid.org/0000-0003-4036-3642
Zi-Bing JinBeijing Institute of Ophthalmology, Beijing Tongren Hospital, Capital Medical University, 100008, Beijing, China.ORCID http://orcid.org/0000-0003-0515-698X
Nicholas G MartinQueensland Institute of Medical Research Berghofer, Brisbane, QLD, 4006, Australia.ORCID http://orcid.org/0000-0003-4069-8020
Dongsheng FanDepartment of Neurology, Peking University Third Hospital, 100191, Beijing, China.
Grant W MontgomeryInstitute for Molecular Bioscience, The University of Queensland, Brisbane, QLD, 4072, Australia.ORCID http://orcid.org/0000-0002-4140-8139
Jian YangSchool of Life Sciences, Westlake University, Hangzhou, 310030, Zhejiang, China.ORCID http://orcid.org/0000-0003-2001-2474
Naomi R WrayInstitute for Molecular Bioscience, The University of Queensland, Brisbane, QLD, 4072, Australia.ORCID http://orcid.org/0000-0001-7421-3357
Riccardo E MarioniCentre for Genomic and Experimental Medicine, Institute of Genetics and Cancer, University of Edinburgh, Edinburgh, EH4 2XU, UK.ORCID http://orcid.org/0000-0003-4430-4260
Peter M VisscherInstitute for Molecular Bioscience, The University of Queensland, Brisbane, QLD, 4072, Australia.ORCID http://orcid.org/0000-0002-2143-8760
Allan F McRaeInstitute for Molecular Bioscience, The University of Queensland, Brisbane, QLD, 4072, Australia. a.mcrae@uq.edu.au.ORCID http://orcid.org/0000-0001-5286-5485

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

DNA methylation is an ideal trait to study the extent of the shared genetic control across ancestries, effectively providing hundreds of thousands of model molecular traits with large QTL effect sizes. We investigate cis DNAm QTLs in three European (n = 3701) and two East Asian (n = 2099) cohorts to quantify the similarities and differences in the genetic architecture across populations. We observe 80,394 associated mQTLs (62.2% of DNAm probes with significant mQTL) to be significant in both ancestries, while 28,925 mQTLs (22.4%) are identified in only a single ancestry. mQTL effect sizes are highly conserved across populations, with differences in mQTL discovery likely due to differences in allele frequency of associated variants and differing linkage disequilibrium between causal variants and assayed SNPs. This study highlights the overall similarity of genetic control across ancestries and the value of ancestral diversity in increasing the power to detect associations and enhancing fine mapping resolution.

Indexed as

DNA MethylationEast Asian PeopleGene Expression RegulationGenome-Wide Association StudyHumansLinkage DisequilibriumPolymorphism, Single NucleotideQuantitative Trait Loci

Identifiers

PMID38548728
PMCPMC10978881

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.