Evidence map›Paper›PMID 38548715›Full record

ArticleNature communications2024

Structure and function of Semaphorin-5A glycosaminoglycan interactions.

Gergely N Nagy, Xiao-Feng Zhao, Richard Karlsson, Karen Wang, Ramona Duman, Karl Harlos, Kamel El Omari, Armin Wagner, Henrik Clausen, Rebecca L Miller and 2 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
4.8field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 18 citations in OpenAlex.

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  11. Compositional and topological determinants of a physiological Ashwell-Morell receptor ligand.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
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  16. AFrontiers in cellular and infection microbiology · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 4 institutions in 4 countries.

Gergely N NagyDivision of Structural Biology, Wellcome Centre for Human Genetics, University of Oxford, Oxford, UK. nagy.gergely.nandor@vbk.bme.hu.ORCID http://orcid.org/0000-0003-1761-5610
Xiao-Feng ZhaoDepartment of Cell and Developmental Biology, University of Michigan Medical School, Ann Arbor, MI, USA.ORCID http://orcid.org/0000-0002-7574-7163
Richard KarlssonCopenhagen Center for Glycomics, Department of Cellular and Molecular Medicine, Faculty of Health Sciences, University of Copenhagen, Copenhagen-N, Denmark.ORCID http://orcid.org/0000-0003-0448-6135
Karen WangDepartment of Cell and Developmental Biology, University of Michigan Medical School, Ann Arbor, MI, USA.
Ramona DumanDiamond Light Source, Harwell Science and Innovation Campus, Didcot, UK.
Karl HarlosDivision of Structural Biology, Wellcome Centre for Human Genetics, University of Oxford, Oxford, UK.
Kamel El OmariDiamond Light Source, Harwell Science and Innovation Campus, Didcot, UK.ORCID http://orcid.org/0000-0003-3506-6045
Armin WagnerDiamond Light Source, Harwell Science and Innovation Campus, Didcot, UK.ORCID http://orcid.org/0000-0001-8995-7324
Henrik ClausenCopenhagen Center for Glycomics, Department of Cellular and Molecular Medicine, Faculty of Health Sciences, University of Copenhagen, Copenhagen-N, Denmark.ORCID http://orcid.org/0000-0002-0915-5055
Rebecca L MillerCopenhagen Center for Glycomics, Department of Cellular and Molecular Medicine, Faculty of Health Sciences, University of Copenhagen, Copenhagen-N, Denmark. rmiller@sund.ku.dk.ORCID http://orcid.org/0000-0001-8574-1948
Roman J GigerDepartment of Cell and Developmental Biology, University of Michigan Medical School, Ann Arbor, MI, USA. rgiger@med.umich.edu.ORCID http://orcid.org/0000-0002-2926-3336
E Yvonne JonesDivision of Structural Biology, Wellcome Centre for Human Genetics, University of Oxford, Oxford, UK. yvonne.jones@strubi.ox.ac.uk.ORCID http://orcid.org/0000-0002-3834-1893
Centre for Human Genetics · GBDiamond Light Source · GBUniversity of Copenhagen · DKUniversity of Michigan · US

Funding

Inhibitors of Synaptogenesis and Mental HealthR01MH119346 · NIMH · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI GIGER, ROMAN JENO · 2019 to 2023
$2.6M
Medical Research Council MR/T000503/1NIMH NIH HHS R01 MH119346Wellcome Trust
6 · The paper itself

Abstract

Integration of extracellular signals by neurons is pivotal for brain development, plasticity, and repair. Axon guidance relies on receptor-ligand interactions crosstalking with extracellular matrix components. Semaphorin-5A (Sema5A) is a bifunctional guidance cue exerting attractive and inhibitory effects on neuronal growth through the interaction with heparan sulfate (HS) and chondroitin sulfate (CS) glycosaminoglycans (GAGs), respectively. Sema5A harbors seven thrombospondin type-1 repeats (TSR1-7) important for GAG binding, however the underlying molecular basis and functions in vivo remain enigmatic. Here we dissect the structural basis for Sema5A:GAG specificity and demonstrate the functional significance of this interaction in vivo. Using x-ray crystallography, we reveal a dimeric fold variation for TSR4 that accommodates GAG interactions. TSR4 co-crystal structures identify binding residues validated by site-directed mutagenesis. In vitro and cell-based assays uncover specific GAG epitopes necessary for TSR association. We demonstrate that HS-GAG binding is preferred over CS-GAG and mediates Sema5A oligomerization. In vivo, Sema5A:GAG interactions are necessary for Sema5A function and regulate Plexin-A2 dependent dentate progenitor cell migration. Our study rationalizes Sema5A associated developmental and neurological disorders and provides mechanistic insights into how multifaceted guidance functions of a single transmembrane cue are regulated by proteoglycans.

Indexed as

GlycosaminoglycansSemaphorinsCell MovementHeparan SulfateProteoglycansGlycosaminoglycansHeparan SulfateProteoglycansSemaphorins

Identifiers

PMID38548715
PMCPMC10978931
OpenAlexW4393258643

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.