Evidence map›Paper›PMID 38547421›Full record

ArticleJCO precision oncology2024

Comprehensive Immunogenomic Profiling of

Shalini Makawita, Sunyoung Lee, Elisabeth Kong, Lawrence N Kwong, Zeyad Abouelfetouh, Anaemy Danner De Armas, Lianchun Xiao, Karthikeyan Murugesan, Natalie Danziger, Dean Pavlick and 3 more

Open access · greenAbstract read
In one paragraph

Article in JCO precision oncology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed, 1 pooled it
6.3field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 1 synthesis or guideline pooled it, 11 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Advances in Immunotherapy for Intrahepatic Cholangiocarcinoma.International journal of molecular sciences · 2026
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  8. Isocitrate dehydrogenase mutations as potential tumour agnostic targets.EJC supplements : EJC : official journal of EORTC, European Organization for Research and Treatment of Cancer ... [et al.] · 2026
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 6 institutions in 1 country.

Shalini MakawitaDepartment of Hematology & Oncology, Dan L. Duncan Cancer Center, Baylor College of Medicine, Houston, TX.ORCID 0000-0001-6065-6464
Sunyoung LeeDepartment of Gastrointestinal Medical Oncology, The University of Texas MD Anderson Cancer Center, Houston, TX.
Elisabeth KongDepartment of Bioinformatics and Computational Biology, The University of Texas MD, Houston, TX.
Lawrence N KwongDepartment of Translational Molecular Pathology, The University of Texas MD Anderson Cancer Center, Houston, TX.ORCID 0000-0001-8370-1432
Zeyad AbouelfetouhHouston Methodist Research Institute, Houston, TX.ORCID 0000-0002-0563-2061
Anaemy Danner De ArmasDepartment of Pediatrics-Diabetes and Endocrinology, Baylor College of Medicine, Houston, TX.ORCID 0000-0001-9614-8867
Lianchun XiaoDepartment of Biostatistics, The University of Texas MD Anderson Cancer Center, Houston, TX.
Karthikeyan MurugesanCancer Genomics Research and Pathology, Foundation Medicine Inc, Cambridge, MA.ORCID 0000-0002-2275-1126
Natalie DanzigerCancer Genomics Research and Pathology, Foundation Medicine Inc, Cambridge, MA.ORCID 0000-0003-2642-7160
Dean PavlickCancer Genomics Research and Pathology, Foundation Medicine Inc, Cambridge, MA.ORCID 0000-0001-6075-6246
Anil KorkutDepartment of Bioinformatics and Computational Biology, The University of Texas MD, Houston, TX.
Jeffrey S RossCancer Genomics Research and Pathology, Foundation Medicine Inc, Cambridge, MA.ORCID 0000-0001-8494-2596
Milind JavleDepartment of Gastrointestinal Medical Oncology, The University of Texas MD Anderson Cancer Center, Houston, TX.ORCID 0000-0001-9158-0941
The University of Texas MD Anderson Cancer Center · USFoundation Medicine (United States)Baylor College of Medicine · USUniversity of Houston · USHouston Methodist · USSUNY Upstate Medical University · US

Funding

TRAINING PROGRAM IN COMPUTATIONAL BIOLOGY AND MEDICINET15LM007093 · NLM · RICE UNIVERSITY · PI Lydia E. Kavraki · 1992 to 2026
$20.8M
NLM NIH HHS T15 LM007093
6 · The paper itself

Abstract

purposeIsocitrate dehydrogenase (

methodsComprehensive genomic profiling (CGP) was performed on 3,067 cases of advanced iCCA. Tumor mutational burden (TMB), PD-L1 expression (Dako 22C3), microsatellite instability (MSI), and genomic loss of heterozygosity (gLOH) as a surrogate marker for homologous recombination deficiency were examined. RNA sequencing of 73 patient samples was analyzed for differences in stromal/immune cell infiltration, immune marker expression, and T-cell inflammation. Tissue microarray arrays were subjected to multiplex immunohistochemistry and colocalization analysis in 100 surgical samples. Retrospective clinical data were collected for 501 patients with cholangiocarcinoma to examine median overall survival (mOS) in

resultsOf 3,067 iCCA cases subjected to CGP, 426 (14%) were

conclusionSignificant differences in GA and immune biomarkers are noted between

Indexed as

Bile Duct NeoplasmsCholangiocarcinomaIsocitrate DehydrogenaseB7-H1 AntigenBile Ducts, IntrahepaticBiomarkers, TumorHumansMutationRetrospective StudiesB7-H1 AntigenBiomarkers, TumorIDH1 protein, humanIsocitrate Dehydrogenase

Identifiers

PMID38547421
PMCPMC10994443
OpenAlexW4393282739

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.