Evidence map›Paper›PMID 38547260›Full record

ArticleScience (New York, N.Y.)2024

Pyrimidines maintain mitochondrial pyruvate oxidation to support de novo lipogenesis.

Umakant Sahu, Elodie Villa, Colleen R Reczek, Zibo Zhao, Brendan P O'Hara, Michael D Torno, Rohan Mishra, William D Shannon, John M Asara, Peng Gao and 3 more

Open access · greenAbstract read
In one paragraph

Article in Science (New York, N.Y.), 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 44 papers.

0numbers the graph read from it
0cells of the map it votes in
44citing papers in PubMed
17.7field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

44 citing papers in PubMed, 60 citations in OpenAlex.

  1. Article
  2. Oxygen-vacancy-engineered t-ZnO-CeOBioactive materials · 2026
    Article
  3. The In Situ Electrochemical-Chemical Cascade Strategy for Pyruvic Acid Synthesis.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026
    Article
  4. Article
  5. Article
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  8. Review
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  18. Article
  19. Article
  20. Physiological Responses to Thermal Stress in the Liver ofAnimals : an open access journal from MDPI · 2025
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 3 institutions in 1 country.

Umakant Sahu *Department of Biochemistry and Molecular Genetics, Feinberg School of Medicine, Northwestern University, Chicago, IL 60611, USA.ORCID 0000-0002-7269-4430
Elodie Villa *Department of Biochemistry and Molecular Genetics, Feinberg School of Medicine, Northwestern University, Chicago, IL 60611, USA.ORCID 0009-0000-0828-5248
Colleen R ReczekRobert H. Lurie Comprehensive Cancer Center, Northwestern University, Chicago, IL 60611, USA.ORCID 0000-0002-9106-5912
Zibo ZhaoDepartment of Biochemistry and Molecular Genetics, Feinberg School of Medicine, Northwestern University, Chicago, IL 60611, USA.ORCID 0000-0003-1089-2375
Brendan P O'HaraDepartment of Biochemistry and Molecular Genetics, Feinberg School of Medicine, Northwestern University, Chicago, IL 60611, USA.
Michael D TornoDepartment of Biochemistry and Molecular Genetics, Feinberg School of Medicine, Northwestern University, Chicago, IL 60611, USA.ORCID 0000-0003-0240-5944
Rohan MishraBioRankings, St. Louis, MO 63108, USA.
William D ShannonBioRankings, St. Louis, MO 63108, USA.
John M AsaraMass Spectrometry Core, Beth Israel Deaconess Medical Center, Department of Medicine, Harvard Medical School, Boston, MA 02115, USA.ORCID 0000-0001-7450-2589
Peng GaoMetabolomics Core Facility, Robert H. Lurie Comprehensive Cancer Center, Northwestern University, Chicago, IL 60611, USA.ORCID 0000-0002-9991-6064
Ali ShilatifardDepartment of Biochemistry and Molecular Genetics, Feinberg School of Medicine, Northwestern University, Chicago, IL 60611, USA.ORCID 0000-0002-7490-2854
Navdeep S ChandelDepartment of Biochemistry and Molecular Genetics, Feinberg School of Medicine, Northwestern University, Chicago, IL 60611, USA.ORCID 0000-0001-7208-3886
Issam Ben-SahraDepartment of Biochemistry and Molecular Genetics, Feinberg School of Medicine, Northwestern University, Chicago, IL 60611, USA.ORCID 0000-0001-9333-4162
Northwestern University · USBioRankings (United States) · USBeth Israel Deaconess Medical Center · US

Funding

Tissue resident macrophages regulate proteostasis in the aging lungP01AG049665 · NIA · NORTHWESTERN UNIVERSITY AT CHICAGO · PI GR Scott Budinger · 2015 to 2026
$26.9M
Mutations of Chromatin and its Modifying Machineries in MalignanciesR35CA197569 · NCI · NORTHWESTERN UNIVERSITY AT CHICAGO · PI Ali Shilatifard · 2015 to 2026
$10.7M
Mitochondrial metabolism and ROS regulate cancerR35CA197532 · NCI · NORTHWESTERN UNIVERSITY AT CHICAGO · PI CHANDEL, NAVDEEP S · 2016 to 2022
$6.3M
Regulation of de novo purine synthesis by the MAPK/ERK pathwayR01GM135587 · NIGMS · NORTHWESTERN UNIVERSITY AT CHICAGO · PI BEN-SAHRA, ISSAM · 2020 to 2024
$1.7M
Control of RNA methylation by growth signals through the mTORC1 pathwayR01GM143334 · NIGMS · NORTHWESTERN UNIVERSITY AT CHICAGO · PI BEN-SAHRA, ISSAM · 2021 to 2024
$1.3M
Epigenetics, Metabolism and CancerT32CA281953 · NCI · NORTHWESTERN UNIVERSITY AT CHICAGO · PI Ali Shilatifard · 2023 to 2026
$1.2M
NCI NIH HHS R35 CA197532NCI NIH HHS R35 CA197569NCI NIH HHS T32 CA281953NIA NIH HHS P01 AG049665NIGMS NIH HHS R01 GM135587NIGMS NIH HHS R01 GM143334
6 · The paper itself

Abstract

Cellular purines, particularly adenosine 5'-triphosphate (ATP), fuel many metabolic reactions, but less is known about the direct effects of pyrimidines on cellular metabolism. We found that pyrimidines, but not purines, maintain pyruvate oxidation and the tricarboxylic citric acid (TCA) cycle by regulating pyruvate dehydrogenase (PDH) activity. PDH activity requires sufficient substrates and cofactors, including thiamine pyrophosphate (TPP). Depletion of cellular pyrimidines decreased TPP synthesis, a reaction carried out by TPP kinase 1 (TPK1), which reportedly uses ATP to phosphorylate thiamine (vitamin B1). We found that uridine 5'-triphosphate (UTP) acts as the preferred substrate for TPK1, enabling cellular TPP synthesis, PDH activity, TCA-cycle activity, lipogenesis, and adipocyte differentiation. Thus, UTP is required for vitamin B1 utilization to maintain pyruvate oxidation and lipogenesis.

Indexed as

Citric Acid CycleLipogenesisPyrimidinesPyruvate Dehydrogenase ComplexPyruvatesAdenosine TriphosphateHeLa CellsHumansOxidation-ReductionProtein KinasesThiamineThiamine PyrophosphateUridine TriphosphateAdenosine TriphosphateProtein KinasesPyrimidinesPyruvate Dehydrogenase ComplexPyruvatesThiamineThiamine PyrophosphateUridine Triphosphate

Identifiers

PMID38547260
PMCPMC11325697
OpenAlexW4393279432

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.