Evidence map›Paper›PMID 38543842›Full record

ArticleViruses2024

Epidemiological and Genetic Characterization of Coxsackievirus A6-Associated Hand, Foot, and Mouth Disease in Gwangju, South Korea, in 2022.

Ji-Eun Lee, Min-Ji Kim, Mi-Hyeon Lim, Sue-Ji Han, Jin-Yeong Kim, Soo-Hoo Kim, Yi-Duen Ha, Gyung-Li Gang, Yoon-Seok Chung, Jung-Mi Seo

Open access · goldAbstract read
In one paragraph

Article in Viruses, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed, 1 pooled it
2.8field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 1 synthesis or guideline pooled it, 7 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 1 institution in 1 country.

Ji-Eun LeeHealth and Environment Research Institute of Gwangju, Gwangju 61954, Republic of Korea.ORCID 0000-0001-5423-4206
Min-Ji KimHealth and Environment Research Institute of Gwangju, Gwangju 61954, Republic of Korea.
Mi-Hyeon LimHealth and Environment Research Institute of Gwangju, Gwangju 61954, Republic of Korea.
Sue-Ji HanHealth and Environment Research Institute of Gwangju, Gwangju 61954, Republic of Korea.
Jin-Yeong KimHealth and Environment Research Institute of Gwangju, Gwangju 61954, Republic of Korea.
Soo-Hoo KimHealth and Environment Research Institute of Gwangju, Gwangju 61954, Republic of Korea.
Yi-Duen HaHealth and Environment Research Institute of Gwangju, Gwangju 61954, Republic of Korea.
Gyung-Li GangHealth and Environment Research Institute of Gwangju, Gwangju 61954, Republic of Korea.
Yoon-Seok ChungDivision of High-Risk Pathogen, Bureau of Infectious Diseases Diagnosis Control, Korea Disease Control and Prevention Agency (KDCA), Cheongju 28159, Republic of Korea.ORCID 0000-0003-4562-5533
Jung-Mi SeoHealth and Environment Research Institute of Gwangju, Gwangju 61954, Republic of Korea.
Gwangju Health University · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Coxsackievirus A6 (CV-A6) has emerged as the predominant causative agent of hand, foot, and mouth disease (HFMD) in young children. Since the declaration of coronavirus disease 2019 (COVID-19) as a global pandemic, the incidence of infectious diseases, including HFMD, has decreased markedly. When social mitigation was relaxed during the COVID-19 pandemic in 2022, the re-emergence of HFMD was observed in Gwangju, South Korea, and seasonal characteristics of the disease appeared to have changed. To investigate the molecular characteristics of enterovirus (EV) associated with HFMD during 2022, 277 specimens were collected. Children aged younger than 5 years accounted for the majority of affected individuals. EV detection and genotyping were performed using real-time RT-PCR and nested RT-PCR followed by sequence analysis. The EV detection rate was found to be 82.3%, and the main genotype identified was CV-A6. Sixteen CV-A6 samples were selected for whole genome sequencing. According to phylogenetic analysis, all CV-A6 strains from this study belonged to the sub-genotype D3 clade based on VP1 sequences. Analysis of 3D polymerase phylogeny showed that only the recombinant RF-A group was identified. In conclusion, circulating EV types should be continuously monitored to understand pathogen emergence and evolution during the post-pandemic era.

Indexed as

EnterovirusHand, Foot and Mouth DiseaseAntigens, ViralChildChild, PreschoolChinaGenotypeHumansPandemicsPhylogenyReal-Time Polymerase Chain ReactionAntigens, Viralcoxsackievirus A6HFMDmolecular epidemiologyphylogenetic tree

Identifiers

PMID38543842
PMCPMC10975452
OpenAlexW4392993680

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.