Evidence map›Paper›PMID 38543838›Full record

ArticleViruses2024

Cross-Reactivity Assessment of Vaccine-Derived SARS-CoV-2 T Cell Responses against BA.2.86 and JN.1.

Muhammad Saqib Sohail, Syed Faraz Ahmed, Ahmed Abdul Quadeer, Matthew R McKay

Open access · goldAbstract read
In one paragraph

Article in Viruses, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
3.7field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 16 citations in OpenAlex.

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  13. Performance of the Roche Elecsys® IGRA SARS-CoV-2 test for the detection and quantification of virus-reactive T cells in COVID-19-vaccinated immunosuppressed patients and healthy subjects.European journal of clinical microbiology & infectious diseases : official publication of the European Society of Clinical Microbiology · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 2 countries.

Muhammad Saqib SohailDepartment of Electronic and Computer Engineering, The Hong Kong University of Science and Technology, Hong Kong SAR, China.ORCID 0000-0001-9096-7634
Syed Faraz AhmedDepartment of Electrical and Electronic Engineering, University of Melbourne, Parkville, VIC 3010, Australia.ORCID 0000-0002-6086-0307
Ahmed Abdul QuadeerDepartment of Electrical and Electronic Engineering, University of Melbourne, Parkville, VIC 3010, Australia.ORCID 0000-0002-5295-9067
Matthew R McKayDepartment of Electrical and Electronic Engineering, University of Melbourne, Parkville, VIC 3010, Australia.ORCID 0000-0002-8086-2545
The University of Melbourne · AUHong Kong University of Science and Technology · HK

Funding

ARC Future Fellowship FT200100928Australian Research Council (ARC) Discovery Project DP 230102850Theme-Based Research Scheme of the Hong Kong Research Grants Council (RGC) T11-705/21N
6 · The paper itself

Abstract

The SARS-CoV-2 Omicron sub-variants BA.2.86 and JN.1 contain multiple mutations in the spike protein that were not present in previous variants of concern and Omicron sub-variants. Preliminary research suggests that these variants reduce the neutralizing capability of antibodies induced by vaccines, which is particularly significant for JN.1. This raises concern as many widely deployed COVID-19 vaccines are based on the spike protein of the ancestral Wuhan strain of SARS-CoV-2. While T cell responses have been shown to be robust against previous SARS-CoV-2 variants, less is known about the impact of mutations in BA.2.86 and JN.1 on T cell responses. We evaluate the effect of mutations specific to BA.2.86 and JN.1 on experimentally determined T cell epitopes derived from the spike protein of the ancestral Wuhan strain and the spike protein of the XBB.1.5 strain that has been recommended as a booster vaccine. Our data suggest that BA.2.86 and JN.1 affect numerous T cell epitopes in spike compared to previous variants; however, the widespread loss of T cell recognition against these variants is unlikely.

Indexed as

COVID-19VaccinesAntibodies, NeutralizingAntibodies, ViralCOVID-19 VaccinesEpitopes, T-LymphocyteHumansSARS-CoV-2Spike Glycoprotein, CoronavirusT-LymphocytesAntibodies, NeutralizingAntibodies, ViralCOVID-19 VaccinesEpitopes, T-LymphocyteSpike Glycoprotein, Coronavirusspike protein, SARS-CoV-2VaccinesBA.2.86COVID-19immune escapeJN.1mutationsSARS-CoV-2T cell epitopesvaccines

Identifiers

PMID38543838
PMCPMC10975570
OpenAlexW4393006205

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.