Evidence map›Paper›PMID 38542350›Full record

ArticleInternational journal of molecular sciences2024

Genome-Wide Association Studies on the Kernel Row Number in a Multi-Parent Maize Population.

Yizhu Wang, Fengyun Ran, Xingfu Yin, Fuyan Jiang, Yaqi Bi, Ranjan K Shaw, Xingming Fan

Open access · goldAbstract read
In one paragraph

Article in International journal of molecular sciences, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
3.3field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 6 citations in OpenAlex.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Yizhu WangCollege of Agronomy and Biotechnology, Yunnan Agricultural University, Kunming 650201, China.
Fengyun RanCollege of Agronomy and Biotechnology, Yunnan Agricultural University, Kunming 650201, China.
Xingfu YinInstitute of Food Crops, Yunnan Academy of Agricultural Sciences, Kunming 650205, China.
Fuyan JiangInstitute of Food Crops, Yunnan Academy of Agricultural Sciences, Kunming 650205, China.
Yaqi BiInstitute of Food Crops, Yunnan Academy of Agricultural Sciences, Kunming 650205, China.
Ranjan K ShawInstitute of Food Crops, Yunnan Academy of Agricultural Sciences, Kunming 650205, China.
Xingming FanInstitute of Food Crops, Yunnan Academy of Agricultural Sciences, Kunming 650205, China.ORCID 0009-0009-4742-9246
Yunnan Academy of Agricultural Sciences · CNYunnan Agricultural University · CN

Funding

the Joint Laboratory Project of Yunnan Province Seed Industry 202205AR070001the Special Support for Seed Industry of Food Security in Yunnan Province 530000210000000013809This research was funded by the National Natural Science Foundation of China Project U2202204
6 · The paper itself

Abstract

Kernel row number (KRN) is a crucial trait in maize that directly influences yield; hence, understanding the mechanisms underlying KRN is vital for the development of high-yielding inbred lines and hybrids. We crossed four excellent panicle inbred lines (CML312, CML444, YML46, and YML32) with Ye107, and after eight generations of selfing, a multi-parent population was developed comprising four subpopulations, each consisting of 200 lines. KRN was accessed in five environments in Yunnan province over three years (2019, 2021, and 2022). The objectives of this study were to (1) identify quantitative trait loci and single nucleotide polymorphisms associated with KRN through linkage and genome-wide association analyses using high-quality genotypic data, (2) identify candidate genes regulating KRN by identifying co-localized QTLs and SNPs, and (3) explore the pathways involved in KRN formation and identify key candidate genes through Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment analyses. Our study successfully identified 277 significant Quantitative trait locus (QTLs) and 53 significant Single Nucleotide Polymorphism (SNPs) related to KRN. Based on gene expression, GO, and KEGG analyses, SNP-177304649, SNP-150393177, SNP-135283055, SNP-138554600, and SNP-120370778, which were highly likely to be associated with KRN, were identified. Seven novel candidate genes at this locus (

Indexed as

Genome-Wide Association StudyZea maysChinaChromosome MappingGenetic LinkagePhenotypePolymorphism, Single Nucleotidecandidate geneGO/KEGG analysisGWASKRNmaizeMo17QTL

Identifiers

PMID38542350
PMCPMC10970222
OpenAlexW4392925762

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.