Evidence map›Paper›PMID 38541046›Full record

ArticleJournal of personalized medicine2024

Rapid and Label-Free Histopathology of Oral Lesions Using Deep Learning Applied to Optical and Infrared Spectroscopic Imaging Data.

Matthew P Confer, Kianoush Falahkheirkhah, Subin Surendran, Sumsum P Sunny, Kevin Yeh, Yen-Ting Liu, Ishaan Sharma, Andres C Orr, Isabella Lebovic, William J Magner and 8 more

Open access · goldAbstract read
In one paragraph

Article in Journal of personalized medicine, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
4.0field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 6 citations in OpenAlex.

  1. Article
  2. Review
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  4. Article
  5. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 5 institutions in 2 countries.

Matthew P ConferBeckman Institute for Advanced Science and Technology, University of Illinois Urbana Champaign, Urbana, IL 61820, USA.ORCID 0000-0002-0856-3583
Kianoush FalahkheirkhahBeckman Institute for Advanced Science and Technology, University of Illinois Urbana Champaign, Urbana, IL 61820, USA.ORCID 0000-0003-2781-2693
Subin SurendranHead & Neck Surgery, Roswell Park Comprehensive Cancer Center, Buffalo, NY 14263, USA.ORCID 0000-0002-6660-2798
Sumsum P SunnyHead and Neck Surgery, Mazumdar Shaw Medical Foundation, Narayana Health City, Bangalore 560099, India.
Kevin YehBeckman Institute for Advanced Science and Technology, University of Illinois Urbana Champaign, Urbana, IL 61820, USA.ORCID 0000-0002-7012-7483
Yen-Ting LiuBeckman Institute for Advanced Science and Technology, University of Illinois Urbana Champaign, Urbana, IL 61820, USA.ORCID 0000-0002-5768-0516
Ishaan SharmaBeckman Institute for Advanced Science and Technology, University of Illinois Urbana Champaign, Urbana, IL 61820, USA.ORCID 0009-0004-7498-5444
Andres C OrrBeckman Institute for Advanced Science and Technology, University of Illinois Urbana Champaign, Urbana, IL 61820, USA.
Isabella LebovicDepartment of Bioengineering, University of Illinois Urbana Champaign, Urbana, IL 61820, USA.
William J MagnerHead & Neck Surgery, Roswell Park Comprehensive Cancer Center, Buffalo, NY 14263, USA.ORCID 0000-0001-5314-9536
Sandra Lynn SigurdsonHead & Neck Surgery, Roswell Park Comprehensive Cancer Center, Buffalo, NY 14263, USA.
Alfredo AguirreOral Diagnostic Sciences, University at Buffalo School of Dental Medicine, Buffalo, NY 14215, USA.
Michael R MarkiewiczHead & Neck Surgery, Roswell Park Comprehensive Cancer Center, Buffalo, NY 14263, USA.
Amritha SureshHead & Neck Surgery, Roswell Park Comprehensive Cancer Center, Buffalo, NY 14263, USA.
Wesley L HicksHead & Neck Surgery, Roswell Park Comprehensive Cancer Center, Buffalo, NY 14263, USA.
Praveen BirurKLE Society Institute of Dental Sciences, Bangalore 560099, India.ORCID 0000-0001-5287-8323
Moni Abraham KuriakoseHead & Neck Surgery, Roswell Park Comprehensive Cancer Center, Buffalo, NY 14263, USA.
Rohit BhargavaBeckman Institute for Advanced Science and Technology, University of Illinois Urbana Champaign, Urbana, IL 61820, USA.
University of Illinois Urbana-Champaign · USRoswell Park Comprehensive Cancer Center · USKamineni Institute of Dental Sciences · INNarayana Health · INUniversity at Buffalo, State University of New York · US

Funding

Two-Spirit Films in Indigenous Cancer HealthP30CA016056 · NCI · ROSWELL PARK CANCER INSTITUTE CORP · PI Dean G. Tang · 1985 to 2026
$116.6M
The Center for Label-free Imagingand Multiscale Biophotonics (CLIMB)P41EB031772 · NIBIB · UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN · PI Stephen A Boppart · 2022 to 2026
$7.6M
Discrete Frequency Infrared Spectroscopic Imaging for Breast HistopathologyR01EB009745 · NIBIB · UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN · PI BHARGAVA, ROHIT · 2010 to 2025
$5.1M
NCI NIH HHS P30CA016056NIH HHS P41EB031772NIH HHS R01EB009745
6 · The paper itself

Abstract

Oral potentially malignant disorders (OPMDs) are precursors to over 80% of oral cancers. Hematoxylin and eosin (H&E) staining, followed by pathologist interpretation of tissue and cellular morphology, is the current gold standard for diagnosis. However, this method is qualitative, can result in errors during the multi-step diagnostic process, and results may have significant inter-observer variability. Chemical imaging (CI) offers a promising alternative, wherein label-free imaging is used to record both the morphology and the composition of tissue and artificial intelligence (AI) is used to objectively assign histologic information. Here, we employ quantum cascade laser (QCL)-based discrete frequency infrared (DFIR) chemical imaging to record data from oral tissues. In this proof-of-concept study, we focused on achieving tissue segmentation into three classes (connective tissue, dysplastic epithelium, and normal epithelium) using a convolutional neural network (CNN) applied to three bands of label-free DFIR data with paired darkfield visible imaging. Using pathologist-annotated H&E images as the ground truth, we demonstrate results that are 94.5% accurate with the ground truth using combined information from IR and darkfield microscopy in a deep learning framework. This chemical-imaging-based workflow for OPMD classification has the potential to enhance the efficiency and accuracy of clinical oral precancer diagnosis.

Indexed as

deep learningdiscrete frequency infrared microscopymultimodal imagingoral potentially malignant lesionsprecancerous condition

Identifiers

PMID38541046
PMCPMC10971207
OpenAlexW4392763653

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.