Evidence map›Paper›PMID 38540401›Full record

ArticleGenes2024

Optical Genome Mapping as a Potential Routine Clinical Diagnostic Method.

Hayk Barseghyan, Doris Eisenreich, Evgenia Lindt, Martin Wendlandt, Florentine Scharf, Anna Benet-Pages, Kai Sendelbach, Teresa Neuhann, Angela Abicht, Elke Holinski-Feder and 1 more

Open access · goldAbstract read
In one paragraph

Article in Genes, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
6.1field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 11 citations in OpenAlex.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 2 countries.

Hayk BarseghyanMedical Genetics Center (MGZ), 80335 Munich, Germany.
Doris EisenreichMedical Genetics Center (MGZ), 80335 Munich, Germany.
Evgenia LindtMedical Genetics Center (MGZ), 80335 Munich, Germany.
Martin WendlandtInstitute of Medical Biochemistry and Molecular Biology, University Medicine of Greifswald, 17489 Greifswald, Germany.
Florentine ScharfMedical Genetics Center (MGZ), 80335 Munich, Germany.
Anna Benet-PagesMedical Genetics Center (MGZ), 80335 Munich, Germany.
Kai SendelbachMedical Genetics Center (MGZ), 80335 Munich, Germany.
Teresa NeuhannMedical Genetics Center (MGZ), 80335 Munich, Germany.
Angela AbichtMedical Genetics Center (MGZ), 80335 Munich, Germany.
Elke Holinski-FederMedical Genetics Center (MGZ), 80335 Munich, Germany.ORCID 0000-0002-5172-2818
Udo KoehlerMedical Genetics Center (MGZ), 80335 Munich, Germany.
Medical Genetics Center · DEChildren's National · USUniversitätsmedizin Greifswald · DE

Funding

Medical Genetics Center N/A
6 · The paper itself

Abstract

Chromosome analysis (CA) and chromosomal microarray analysis (CMA) have been successfully used to diagnose genetic disorders. However, many conditions remain undiagnosed due to limitations in resolution (CA) and detection of only unbalanced events (CMA). Optical genome mapping (OGM) has the potential to address these limitations by capturing both structural variants (SVs) resulting in copy number changes and balanced rearrangements with high resolution. In this study, we investigated OGM's concordance using 87 SVs previously identified by CA, CMA, or Southern blot. Overall, OGM was 98% concordant with only three discordant cases: (1) uncalled translocation with one breakpoint in a centromere; (2) uncalled duplication with breakpoints in the pseudoautosomal region 1; and (3) uncalled mosaic triplication originating from a marker chromosome. OGM provided diagnosis for three previously unsolved cases: (1) disruption of the

Indexed as

CentromereTranslocation, GeneticCarrier ProteinsChromosome MappingGenetic MarkersHumansMicroarray AnalysisNerve Tissue ProteinsCarrier ProteinsGenetic MarkersNBEA protein, humanNerve Tissue ProteinsCAchromosomal microarray analysischromosomal rearrangementschromosome analysisCMAcopy number variant CNVOGMoptical genome mappingstructural variantSV

Identifiers

PMID38540401
PMCPMC10970541
OpenAlexW4392558122

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.