Evidence map›Paper›PMID 38539100›Full record

ArticleBMC plant biology2024

Prediction accuracy of genomic estimated breeding values for fruit traits in cultivated tomato (Solanum lycopersicum L.).

Jeyun Yeon, Thuy Tien Phan Nguyen, Minkyung Kim, Sung-Chur Sim

Abstract read
In one paragraph

Article in BMC plant biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Jeyun YeonDepartment of Bioindustry and Bioresource Engineering, Sejong University, Seoul, Republic of Korea.
Thuy Tien Phan NguyenDepartment of Bioindustry and Bioresource Engineering, Sejong University, Seoul, Republic of Korea.
Minkyung KimDepartment of Bioindustry and Bioresource Engineering, Sejong University, Seoul, Republic of Korea.
Sung-Chur SimDepartment of Bioindustry and Bioresource Engineering, Sejong University, Seoul, Republic of Korea. sungchur@sejong.ac.kr.

Funding

Institute of Information & communications Technology Planing & Evaluation (IITP) RS-2023-00227464
6 · The paper itself

Abstract

backgroundGenomic selection (GS) is an efficient breeding strategy to improve quantitative traits. It is necessary to calculate genomic estimated breeding values (GEBVs) for GS. This study investigated the prediction accuracy of GEBVs for five fruit traits including fruit weight, fruit width, fruit height, pericarp thickness, and Brix. Two tomato germplasm collections (TGC1 and TGC2) were used as training populations, consisting of 162 and 191 accessions, respectively.

resultsLarge phenotypic variations for the fruit traits were found in these collections and the 51K Axiom

conclusionOur study explored several factors to increase the prediction accuracy of GEBVs for fruit traits in tomato. The results can facilitate development of advanced GS strategies with cost-effective marker sets for improving fruit traits as well as other traits. Consequently, GS will be successfully applied to accelerate the tomato breeding process for developing elite cultivars.

Indexed as

Solanum lycopersicumBayes TheoremFruitGenomicsGenotypeModels, GeneticPhenotypePlant BreedingPolymorphism, Single NucleotideCross-validationGenomic selectionGermplasm collectionPrediction modelSNP

Identifiers

PMID38539100
PMCPMC10976779

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.