Evidence map›Paper›PMID 38539072›Full record

ArticleBMC plant biology2024

Genome-wide association study for in vitro digestibility and related traits in triticale forage.

Anneleen De Zutter, Maria Chiara Piro, Steven Maenhout, Hans Peter Maurer, Johan De Boever, Hilde Muylle, Isabel Roldán-Ruiz, Geert Haesaert

Open access · goldAbstract read
In one paragraph

Article in BMC plant biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.6field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 1 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Anneleen De ZutterFaculty of Bioscience Engineering, Department of Plants and Crops, Ghent University, Diepestraat 1, Bottelare, 9820, Belgium. anneleen.dezutter@ugent.be.ORCID http://orcid.org/0000-0001-5846-4973
Maria Chiara PiroFaculty of Bioscience Engineering, Department of Plants and Crops, Ghent University, Diepestraat 1, Bottelare, 9820, Belgium.ORCID http://orcid.org/0000-0003-0439-1777
Steven MaenhoutFaculty of Bioscience Engineering, Department of Plants and Crops, Ghent University, Coupure Links 653, Ghent, 9000, Belgium.ORCID http://orcid.org/0000-0001-9185-8747
Hans Peter MaurerState Plant Breeding Institute, University of Hohenheim, 70599, Stuttgart, Germany.ORCID http://orcid.org/0000-0002-6261-1347
Johan De BoeverAnimal Sciences Unit, Flanders Research Institute for Agriculture, Fisheries and Food (ILVO), Scheldeweg 68, Melle, 9090, Belgium.ORCID http://orcid.org/0000-0002-7073-630X
Hilde MuyllePlant Sciences Unit, Flanders Research Institute for Agriculture, Fisheries and Food (ILVO), Caritasstraat 39, Melle, 9090, Belgium.ORCID http://orcid.org/0000-0001-7350-4179
Isabel Roldán-RuizPlant Sciences Unit, Flanders Research Institute for Agriculture, Fisheries and Food (ILVO), Caritasstraat 39, Melle, 9090, Belgium.ORCID http://orcid.org/0000-0001-7340-3386
Geert HaesaertFaculty of Bioscience Engineering, Department of Plants and Crops, Ghent University, Diepestraat 1, Bottelare, 9820, Belgium.ORCID http://orcid.org/0000-0003-2993-9858
Ghent University · BEVlaams Instituut voor Biotechnologie · BEUniversity of Hohenheim · DE

Funding

Fachagentur Nachwachsende Rohstoffe 22024515Horizon 2020 101000847
6 · The paper itself

Abstract

backgroundTriticale is making its way on dairy farms as an alternative forage crop. This requires the availability of high-yielding triticale varieties with good digestibility. Triticale forage breeding mainly focussed on biomass yield, but efforts to improve digestibility are increasing. We previously investigated the interrelationships among different quality traits in soft dough triticale: starch, acid detergent fibre and in vitro digestibility of organic matter (IVOMD) and of neutral detergent fibre (IVNDFD) of the total plant, IVNDFD and Klason lignin of the stems, and ear proportion and stem length. Here we determine the genetic control of these traits, using a genome-wide association (GWAS) approach. A total of 33,231 DArTseq SNP markers assessed in a collection of 118 winter triticale genotypes, including 101 varieties and 17 breeding lines, were used.

resultsThe GWAS identified a total of 53 significant marker-trait associations (MTAs). The highest number of significantly associated SNP markers (n = 10) was identified for total plant IVNDFD. A SNP marker on chromosome 1A (4211801_19_C/T; 474,437,796 bp) was found to be significantly associated with ear proportion, and plant and stem IVNDFD, with the largest phenotypic variation for ear proportion (R²

conclusionsA collection of 118 winter triticale genotypes combined with DArTseq SNP markers served as a source for identifying 53 MTAs and several candidate genes for forage IVD and related traits through a GWAS approach. Taken together, the results of this study demonstrate that the genetic diversity available in this collection can be further exploited for research and breeding purposes to improve the IVD of triticale forage.

Indexed as

Genome-Wide Association StudyTriticaleDetergentsPhenotypePlant BreedingDetergentsForageGWASin vitro digestibilityQTLSNPTriticale

Identifiers

PMID38539072
PMCPMC10976741
OpenAlexW4393234000

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.