Evidence map›Paper›PMID 38537639›Full record

ArticleMolecular cell2024

The splicing regulators RBM5 and RBM10 are subunits of the U2 snRNP engaged with intron branch sites on chromatin.

Andrey Damianov, Chia-Ho Lin, Jeffrey Huang, Lin Zhou, Yasaman Jami-Alahmadi, Parham Peyda, James Wohlschlegel, Douglas L Black

Open access · hybridAbstract read
In one paragraph

Article in Molecular cell, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
5.6field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 26 citations in OpenAlex.

  1. Review
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  11. Genomic Analysis ofJournal of fungi (Basel, Switzerland) · 2025
    Article
  12. Article
  13. Splicing factor RBM10 loss fuels thyroid cancer metastasis.The Journal of experimental medicine · 2025
    Article
  14. Article
  15. Cancer-associated SF3B1 mutation K700E causes widespread changes in U2/branchpoint recognition without altering splicing.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
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  18. Review
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Andrey DamianovDepartment of Microbiology, Immunology, and Molecular Genetics, the David Geffen School of Medicine, University of California, Los Angeles, Los Angeles, CA, USA. Electronic address: damianov@microbio.ucla.edu.
Chia-Ho LinDepartment of Microbiology, Immunology, and Molecular Genetics, the David Geffen School of Medicine, University of California, Los Angeles, Los Angeles, CA, USA.
Jeffrey HuangDepartment of Microbiology, Immunology, and Molecular Genetics, the David Geffen School of Medicine, University of California, Los Angeles, Los Angeles, CA, USA.
Lin ZhouDepartment of Microbiology, Immunology, and Molecular Genetics, the David Geffen School of Medicine, University of California, Los Angeles, Los Angeles, CA, USA.
Yasaman Jami-AlahmadiDepartment of Biological Chemistry, the David Geffen School of Medicine, University of California, Los Angeles, Los Angeles, CA, USA.
Parham PeydaDepartment of Microbiology, Immunology, and Molecular Genetics, the David Geffen School of Medicine, University of California, Los Angeles, Los Angeles, CA, USA.
James WohlschlegelDepartment of Biological Chemistry, the David Geffen School of Medicine, University of California, Los Angeles, Los Angeles, CA, USA.
Douglas L BlackDepartment of Microbiology, Immunology, and Molecular Genetics, the David Geffen School of Medicine, University of California, Los Angeles, Los Angeles, CA, USA. Electronic address: dougb@microbio.ucla.edu.
University of California, Los Angeles · US

Funding

Mechanisms of Post-transcriptional Gene Regulation by RNA Binding ProteinsR35GM136426 · NIGMS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI Douglas L Black · 2020 to 2026
$5.4M
Multi-omic analysis of Myc-driven splicing for prostate cancer therapeutic developmentR01CA220238 · NCI · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI BLACK, DOUGLAS L, WITTE, OWEN N. · 2018 to 2022
$3.2M
Mechanisms of Alternative Splicing Regulation by Rbfox ProteinsR01GM114463 · NIGMS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI BLACK, DOUGLAS L · 2016 to 2019
$1.7M
Identification of novel splicing regulatory complexesR01GM127473 · NIGMS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI DAMIANOV, ANDREY · 2019 to 2023
$1.6M
Comprehensive Maps of U1 snRNP Binding to Nascent RNA in Human CellsR21HG012624 · NHGRI · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI BLACK, DOUGLAS L · 2022 to 2022
$429k
Regulation of Alternative Splicing in the Brain by a Large Assembly of Splicing RegulatorsF30MH130075 · NIMH · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI PEYDA, PARHAM · 2022 to 2025
$192k
NCI NIH HHS R01 CA220238NHGRI NIH HHS R21 HG012624NIGMS NIH HHS R01 GM114463NIGMS NIH HHS R01 GM127473NIGMS NIH HHS R35 GM136426NIMH NIH HHS F30 MH130075
6 · The paper itself

Abstract

Understanding the mechanisms of pre-mRNA splicing is limited by the technical challenges to examining spliceosomes in vivo. Here, we report the isolation of RNP complexes derived from precatalytic A or B-like spliceosomes solubilized from the chromatin pellet of mammalian cell nuclei. We found that these complexes contain U2 snRNP proteins and a portion of the U2 snRNA bound with protected RNA fragments that precisely map to intronic branch sites across the transcriptome. These U2 complexes also contained the splicing regulators RBM5 and RBM10. We found RBM5 and RBM10 bound to nearly all branch site complexes and not simply those at regulated exons. The deletion of a conserved RBM5/RBM10 peptide sequence, including a zinc finger motif, disrupted U2 interaction and rendered the proteins inactive for the repression of many alternative exons. We propose a model where RBM5 and RBM10 regulate splicing as components of the U2 snRNP complex following branch site base pairing.

Indexed as

Ribonucleoprotein, U2 Small NuclearSpliceosomesAnimalsChromatinIntronsMammalsRNA PrecursorsRNA SplicingChromatinRibonucleoprotein, U2 Small NuclearRNA Precursorsalternative splicing regulationintronic branchpointintronic branch siteRBM10RBM5spliceosomeU2 snRNP

Identifiers

PMID38537639
PMCPMC11057915
OpenAlexW4393190907

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.