Evidence map›Paper›PMID 38536879›Full record

ArticleeLife2024

Comprehensive mutagenesis maps the effect of all single-codon mutations in the AAV2

Nina K Jain, Pierce J Ogden, George M Church

Open access · goldAbstract read
In one paragraph

Article in eLife, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
3.4field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 11 citations in OpenAlex.

  1. Progressive Backmapping of Highly Coarse-Grained Protein Models.bioRxiv : the preprint server for biology · 2026
    Article
  2. Article
  3. Article
  4. Residual DNA impurities in AAV vectors-nature and transcription.Molecular therapy. Methods & clinical development · 2025
    Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Review
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 2 countries.

Nina K JainWyss Institute for Biologically Inspired Engineering, Boston, United States.ORCID https://orcid.org/0000-0003-3020-4162
Pierce J OgdenWyss Institute for Biologically Inspired Engineering, Boston, United States.ORCID https://orcid.org/0000-0003-3444-6214
George M ChurchWyss Institute for Biologically Inspired Engineering, Boston, United States.ORCID https://orcid.org/0000-0001-6232-9969
Harvard University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Recombinant adeno-associated viruses (rAAVs) are the predominant gene therapy vector. Several rAAV vectored therapies have achieved regulatory approval, but production of sufficient rAAV quantities remains difficult. The AAV Rep proteins, which are essential for genome replication and packaging, represent a promising engineering target for improvement of rAAV production but remain underexplored. To gain a comprehensive understanding of the Rep proteins and their mutational landscape, we assayed the effects of all 39,297 possible single-codon mutations to the AAV2

Indexed as

Capsid ProteinsGenetic VectorsCapsidDependovirusMutagenesisMutationCapsid Proteinsadeno-associated virusgene therapygeneticsgenomicsrepviruses

Identifiers

PMID38536879
PMCPMC10972557
OpenAlexW4379985299

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.