Evidence map›Paper›PMID 38536857›Full record

ArticlePloS one2024

Investigating the relationship between microbial network features of giant kelp "seedbank" cultures and subsequent farm performance.

Melisa G Osborne, Ariel Levi Simons, Gary Molano, Bernadeth Tolentino, Anupam Singh, Gabriel J Montecinos Arismendi, Filipe Alberto, Sergey V Nuzhdin

Abstract read
In one paragraph

Article in PloS one, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Melisa G OsborneDepartment of Molecular and Computational Biology, University of Southern California, Los Angeles, CA, United States of America.ORCID 0000-0001-5498-0057
Ariel Levi SimonsDepartment of Ecology and Evolutionary Biology, University of California Santa Cruz, Santa Cruz, CA, United States of America.ORCID 0000-0003-0492-5492
Gary MolanoDepartment of Molecular and Computational Biology, University of Southern California, Los Angeles, CA, United States of America.
Bernadeth TolentinoDepartment of Marine and Environmental Biology, University of Southern California, Los Angeles, CA, United States of America.ORCID 0009-0002-9467-2862
Anupam SinghDepartment of Molecular and Computational Biology, University of Southern California, Los Angeles, CA, United States of America.
Gabriel J Montecinos ArismendiDepartment of Biological Sciences, University of Wisconsin-Milwaukee, Milwaukee, WI, United States of America.
Filipe AlbertoDepartment of Biological Sciences, University of Wisconsin-Milwaukee, Milwaukee, WI, United States of America.
Sergey V NuzhdinDepartment of Molecular and Computational Biology, University of Southern California, Los Angeles, CA, United States of America.

Funding

CBI: Chemistry Biology InterfaceT32GM118289 · NIGMS · UNIVERSITY OF SOUTHERN CALIFORNIA · PI FORSBURG, SUSAN L · 2016 to 2020
$1.2M
NIGMS NIH HHS T32 GM118289
6 · The paper itself

Abstract

Microbial inoculants can increase the yield of cultivated crops and are successful in independent trials; however, efficacy drops in large-scale applications due to insufficient consideration of microbial community dynamics. The structure of microbiomes, in addition to the impact of individual taxa, is an important factor to consider when designing growth-promoting inoculants. Here, we investigate the microbial network and community assembly patterns of Macrocystis pyrifera gametophyte germplasm cultures (collectively referred to as a "seedbank") used to cultivate an offshore farm in Santa Barbara, California, and identify network features associated with increased biomass of mature sporophytes. We found that [1] several network features, such as clustering coefficient and edge ratios, significantly vary with biomass outcomes; [2] gametophytes that become low- or high-biomass sporophytes have different hub taxa; and [3] microbial community assembly of gametophyte germplasm cultures is niche-driven. Overall, this study describes microbial community dynamics in M. pyrifera germplasm cultures and ultimately supports the development of early life stage inoculants that can be used on seaweed cultivars to increase biomass yield.

Indexed as

KelpMacrocystisBiomassFarmsMicrobial Consortia

Identifiers

PMID38536857
PMCPMC10971754

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.