Evidence map›Paper›PMID 38536748›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2024

Defining T cell receptor repertoires using nanovial-based binding and functional screening.

Doyeon Koo, Zhiyuan Mao, Robert Dimatteo, Miyako Noguchi, Natalie Tsubamoto, Jami McLaughlin, Wendy Tran, Sohyung Lee, Donghui Cheng, Joseph de Rutte and 3 more

Open access · hybridAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
7.3field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 28 citations in OpenAlex.

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  14. Lab on a Particle Technologies.Analytical chemistry · 2024
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

13 authors at 2 institutions in 1 country.

Doyeon Koo *Department of Bioengineering, University of California, Los Angeles, CA 90095.
Zhiyuan Mao *Department of Molecular and Medical Pharmacology, David Geffen School of Medicine, University of California, Los Angeles, CA 90095.
Robert DimatteoDepartment of Chemical and Biomolecular Engineering, University of California, Los Angeles, CA 90095.
Miyako NoguchiDepartment of Microbiology, Immunology and Molecular Genetics, University of California, Los Angeles, CA 90095.
Natalie TsubamotoDepartment of Bioengineering, University of California, Los Angeles, CA 90095.
Jami McLaughlinDepartment of Microbiology, Immunology and Molecular Genetics, University of California, Los Angeles, CA 90095.
Wendy TranDepartment of Microbiology, Immunology and Molecular Genetics, University of California, Los Angeles, CA 90095.
Sohyung LeeDepartment of Chemical and Biomolecular Engineering, University of California, Los Angeles, CA 90095.ORCID 0000-0003-4414-8149
Donghui ChengEli and Edythe Broad Center of Regenerative Medicine and Stem Cell Research, University of California, Los Angeles, CA 90095.
Joseph de RutteDepartment of Bioengineering, University of California, Los Angeles, CA 90095.
Giselle Burton SojoDepartment of Microbiology, Immunology and Molecular Genetics, University of California, Los Angeles, CA 90095.
Owen N WitteDepartment of Molecular and Medical Pharmacology, David Geffen School of Medicine, University of California, Los Angeles, CA 90095.ORCID 0000-0003-4461-4533
Dino Di CarloDepartment of Bioengineering, University of California, Los Angeles, CA 90095.ORCID 0000-0003-3942-4284
University of California, Los Angeles · USCalifornia NanoSystems Institute · US

Funding

UCLA SPORE IN PROSTATE CANCERP50CA092131 · NCI · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI REITER, ROBERT E · 2002 to 2023
$42.6M
Lab on a particle technology for functional screening of therapeutic cellsR21CA256084 · NCI · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI DI CARLO, DINO · 2021 to 2022
$510k
NCI NIH HHS P50 CA092131NCI NIH HHS R21 CA256084
6 · The paper itself

Abstract

The ability to selectively bind to antigenic peptides and secrete effector molecules can define rare and low-affinity populations of cells with therapeutic potential in emerging T cell receptor (TCR) immunotherapies. We leverage cavity-containing hydrogel microparticles, called nanovials, each coated with peptide-major histocompatibility complex (pMHC) monomers to isolate antigen-reactive T cells. T cells are captured and activated by pMHCs inducing the secretion of effector molecules including IFN-γ and granzyme B that are accumulated on nanovials, allowing sorting based on both binding and function. The TCRs of sorted cells on nanovials are sequenced, recovering paired αβ-chains using microfluidic emulsion-based single-cell sequencing. By labeling nanovials having different pMHCs with unique oligonucleotide-barcodes and secretions with oligo-barcoded detection antibodies, we could accurately link TCR sequences to specific targets and rank each TCR based on the corresponding cell's secretion level. Using the technique, we identified an expanded repertoire of functional TCRs targeting viral antigens with high specificity and found rare TCRs with activity against cancer-specific splicing-enhanced epitopes.

Indexed as

Receptors, Antigen, T-CellT-LymphocytesAntigensHistocompatibility AntigensPeptidesAntigensHistocompatibility AntigensPeptidesReceptors, Antigen, T-Cellsingle-cell secretion analysisTCR immunotherapyTCR sequencing

Identifiers

PMID38536748
PMCPMC10998554
OpenAlexW4393219050

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.