Evidence map›Paper›PMID 38536415›Full record

ArticleMolecular biology of the cell2024

Stress-induced microautophagy is coordinated with lysosome biogenesis and regulated by PIKfyve.

Alison D Klein, Kayla L Petruzzi, Chan Lee, Michael Overholtzer

Open access · greenAbstract read
In one paragraph

Article in Molecular biology of the cell, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
3.5field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 9 citations in OpenAlex.

  1. Emerging mechanisms of ATG8-independent non-canonical autophagy.Journal of physiology and biochemistry · 2026
    Review
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Review
  8. Review
  9. Lysosomal Repair in Health and Disease.Journal of cellular physiology · 2025
    Review
  10. Review
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Alison D KleinBCMB Graduate Program, Weill Cornell Medical College, New York, NY 10065.
Kayla L PetruzziCell Biology Program, Memorial Sloan Kettering Cancer Center, New York, NY 10065.
Chan LeeBCMB Graduate Program, Weill Cornell Medical College, New York, NY 10065.
Michael OverholtzerBCMB Graduate Program, Weill Cornell Medical College, New York, NY 10065.
Memorial Sloan Kettering Cancer Center · US

Funding

X-RAY CRYSTALLOGRAPHYP30CA008748 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI Hongbiao Carl Lekaye · 1985 to 2026
$347.4M
Regulated cell death and responses to starvation in cancerR35CA263846 · NCI · SLOAN-KETTERING INST CAN RESEARCH · PI Michael H. Overholtzer · 2022 to 2026
$4.5M
NCI NIH HHS P30 CA008748NCI NIH HHS R35 CA263846
6 · The paper itself

Abstract

Lysosome turnover and biogenesis are induced in response to treatment of cells with agents that cause membrane rupture, but whether other stress conditions engage similar homeostatic mechanisms is not well understood. Recently we described a form of selective turnover of lysosomes that is induced by metabolic stress or by treatment of cells with ionophores or lysosomotropic agents, involving the formation of intraluminal vesicles within intact organelles through microautophagy. Selective turnover involves noncanonical autophagy and the lipidation of LC3 onto lysosomal membranes, as well as the autophagy gene-dependent formation of intraluminal vesicles. Here, we find a form of microautophagy induction that requires activity of the lipid kinase PIKfyve and is associated with the nuclear translocation of TFEB, a known mediator of lysosome biogenesis. We show that LC3 undergoes turnover during this process, and that PIKfyve is required for the formation of intraluminal vesicles and LC3 turnover, but not for LC3 lipidation onto lysosomal membranes, demonstrating that microautophagy is regulated by PIKfyve downstream of noncanonical autophagy. We further show that TFEB activation requires noncanonical autophagy but not PIKfyve, distinguishing the regulation of biogenesis from microautophagy occurring in response to agents that induce lysosomal stress.

Indexed as

LysosomesMicroautophagyAutophagyBasic Helix-Loop-Helix Leucine Zipper Transcription FactorsCell Line, TumorHumansIntracellular MembranesIonophoresPhosphatidylinositol 3-KinasesBasic Helix-Loop-Helix Leucine Zipper Transcription FactorsIonophoresPhosphatidylinositol 3-KinasesPIKFYVE protein, human

Identifiers

PMID38536415
PMCPMC11151102
OpenAlexW4393220105

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.