Evidence map›Paper›PMID 38536035›Full record

ArticleThe Journal of cell biology2024

DDX6 modulates P-body and stress granule assembly, composition, and docking.

Nina Ripin, Luisa Macedo de Vasconcelos, Daniella A Ugay, Roy Parker

Open access · hybridAbstract read
In one paragraph

Article in The Journal of cell biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
7.2field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 31 citations in OpenAlex.

  1. Live-attenuatedVirulence · 2026
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Nina RipinDepartment of Biochemistry, University of Colorado Boulder, Boulder, CO, USA.ORCID 0000-0001-6099-6506
Luisa Macedo de VasconcelosDepartment of Biochemistry, University of Colorado Boulder, Boulder, CO, USA.ORCID 0000-0003-2016-5606
Daniella A UgayDepartment of Biochemistry, University of Colorado Boulder, Boulder, CO, USA.ORCID 0000-0001-9485-758X
Roy ParkerDepartment of Biochemistry, University of Colorado Boulder, Boulder, CO, USA.ORCID 0000-0002-8412-4152
Howard Hughes Medical Institute · USUniversity of Colorado Boulder · US

Funding

ImageXpress Micro Cellular Imagining and Analysis SystemS10RR026680 · NCRR · UNIVERSITY OF COLORADO · PI LIU, XUEDONG · 2011 to 2011
$380k
The role of Stress Granules and G3BP1 in coupling cytosolic and nuclear stress responsesK99GM148758 · NIGMS · UNIVERSITY OF COLORADO · PI RIPIN, NINA · 2023 to 2024
$248k
Howard Hughes Medical InstituteNCRR NIH HHS S10 RR026680NIGMS NIH HHS K99 GM148758NIH HHS K99GM148758
6 · The paper itself

Abstract

Stress granules and P-bodies are ribonucleoprotein (RNP) granules that accumulate during the stress response due to the condensation of untranslating mRNPs. Stress granules form in part by intermolecular RNA-RNA interactions and can be limited by components of the RNA chaperone network, which inhibits RNA-driven aggregation. Herein, we demonstrate that the DEAD-box helicase DDX6, a P-body component, can also limit the formation of stress granules, independent of the formation of P-bodies. In an ATPase, RNA-binding dependent manner, DDX6 limits the partitioning of itself and other RNPs into stress granules. When P-bodies are limited, proteins that normally partition between stress granules and P-bodies show increased accumulation within stress granules. Moreover, we show that loss of DDX6, 4E-T, and DCP1A increases P-body docking with stress granules, which depends on CNOT1 and PAT1B. Taken together, these observations identify a new role for DDX6 in limiting stress granules and demonstrate that P-body components can influence stress granule composition and docking with P-bodies.

Indexed as

DEAD-box RNA HelicasesProcessing BodiesStress GranulesAdenosine TriphosphatasesCell Line, TumorHumansProto-Oncogene ProteinsRNAAdenosine TriphosphatasesDDX6 protein, humanDEAD-box RNA HelicasesProto-Oncogene ProteinsRNA

Identifiers

PMID38536035
PMCPMC10978804
OpenAlexW4393223224

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.