Evidence map›Paper›PMID 38535319›Full record

ArticleMetabolites2024

Metabolomics and Lipidomics Analyses Aid Model Classification of Type 2 Diabetes in Non-Human Primates.

Peining Tao, Stacey Conarello, Thomas P Wyche, Nanyan Rena Zhang, Keefe Chng, John Kang, Theodore R Sana

Open access · goldAbstract read
In one paragraph

Article in Metabolites, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
1.9field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 8 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Peining TaoBARDS-Biometrics Research, Merck & Co., Inc., Rahway, NJ 07065, USA.
Stacey ConarelloQA Animal Welfare, Merck & Co., Inc., West Point, PA 19486, USA.
Thomas P WycheQuantitative Biosciences, Merck & Co., Inc., Cambridge, MA 02141, USA.
Nanyan Rena ZhangPharmacokinetics, Dynamics, Metabolism & Bioanalytics, Merck & Co., Inc., West Point, PA 19486, USA.
Keefe ChngCrown Bioscience Inc., San Diego, CA 92127, USA.ORCID 0000-0002-6861-0361
John KangBARDS-Biometrics Research, Merck & Co., Inc., Rahway, NJ 07065, USA.
Theodore R SanaQuantitative Biosciences, Merck & Co., Inc., Cambridge, MA 02141, USA.ORCID 0000-0002-8271-4431
Merck & Co., Inc., Rahway, NJ, USA (United States) · USQuantitative BioSciences · USUnited States Military Academy · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Type 2 diabetes (T2D) is a global public health issue characterized by excess weight, abdominal obesity, dyslipidemia, hyperglycemia, and a progressive increase in insulin resistance. Human population studies of T2D development and its effects on systemic metabolism are confounded by many factors that cannot be controlled, complicating the interpretation of results and the identification of early biomarkers. Aged, sedentary, and overweight/obese non-human primates (NHPs) are one of the best animal models to mimic spontaneous T2D development in humans. We sought to identify and distinguish a set of plasma and/or fecal metabolite biomarkers, that have earlier disease onset predictability, and that could be evaluated for their predictability in subsequent T2D studies in human cohorts. In this study, a single plasma and fecal sample was collected from each animal in a colony of 57 healthy and dysmetabolic NHPs and analyzed for metabolomics and lipidomics. The samples were comprehensively analyzed using untargeted and targeted LC/MS/MS. The changes in each animal's disease phenotype were monitored using IVGTT, HbA1c, and other clinical metrics, and correlated with their metabolic profile. The plasma and fecal lipids, as well as bile acid profiles, from Healthy, Dysmetabolic (Dys), and Diabetic (Dia) animals were compared. Following univariate and multivariate analyses, including adjustments for weight, age, and sex, several plasma lipid species were identified to be significantly different between these animal groups. Medium and long-chain plasma phosphatidylcholines (PCs) ranked highest at distinguishing Healthy from Dys animals, whereas plasma triglycerides (TG) primarily distinguished Dia from Dys animals. Random Forest (RF) analysis of fecal bile acids showed a reduction in the secondary bile acid glycoconjugate, GCDCA, in diseased animals (AUC 0.76[0.64, 0.89]). Moreover, metagenomics results revealed several bacterial species, belonging to the genera

Indexed as

bile acidsdysmetabolic and diabeticfeceslatent multivariate modelingLC/MSlipidsLODmachine learningmetabolomicsmTICnon-human primates (NHPs)OPLS-DAphosphatidylcholineplasmarandom foresttriglyceridestype 2 diabetes (T2D)

Identifiers

PMID38535319
PMCPMC10972397
OpenAlexW4392661374

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.