Evidence map›Paper›PMID 38534733›Full record

ArticleCurrent issues in molecular biology2024

In Silico Approach to Molecular Profiling of the Transition from Ovarian Epithelial Cells to Low-Grade Serous Ovarian Tumors for Targeted Therapeutic Insights.

Asim Leblebici, Ceren Sancar, Bahar Tercan, Zerrin Isik, Mehmet Emin Arayici, Ender Berat Ellidokuz, Yasemin Basbinar, Nuri Yildirim

Open access · goldAbstract read
In one paragraph

Article in Current issues in molecular biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
1.6field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 3 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Asim LeblebiciDepartment of Translational Oncology, Institute of Health Sciences, Dokuz Eylul University, 35340 Izmir, Turkey.ORCID 0000-0002-5197-6631
Ceren SancarDepartment of Gynecology and Obstetrics, Faculty of Medicine, Ege University, 35340 Izmir, Turkey.
Bahar TercanInstitute for Systems Biology, Seattle, WA 98109, USA.
Zerrin IsikDepartment of Computer Engineering, Faculty of Engineering, Dokuz Eylul University, 35340 Izmir, Turkey.ORCID 0000-0003-1779-1681
Mehmet Emin ArayiciDepartment of Public Health, Faculty of Medicine, Dokuz Eylul University, 35340 Izmir, Turkey.ORCID 0000-0002-0492-5129
Ender Berat EllidokuzDepartment of Internal Medicine, Faculty of Medicine, Dokuz Eylul University, 35340 Izmir, Turkey.
Yasemin BasbinarDepartment of Translational Oncology, Institute of Oncology, Dokuz Eylul University, 35340 Izmir, Turkey.
Nuri YildirimDepartment of Gynecology and Obstetrics, Faculty of Medicine, Ege University, 35340 Izmir, Turkey.ORCID 0000-0002-0605-4750
Dokuz Eylül University · TREge University · TRInstitute for Systems Biology · US

Funding

A Patient-Centric Approach to Advance Functional Precision OncologyU01CA282109 · NCI · FRED HUTCHINSON CANCER CENTER · PI CHRISTOPHER J KEMP · 2023 to 2026
$4.2M
NCI NIH HHS U01 CA282109
6 · The paper itself

Abstract

This paper aims to elucidate the differentially coexpressed genes, their potential mechanisms, and possible drug targets in low-grade invasive serous ovarian carcinoma (LGSC) in terms of the biologic continuity of normal, borderline, and malignant LGSC. We performed a bioinformatics analysis, integrating datasets generated using the GPL570 platform from different studies from the GEO database to identify changes in this transition, gene expression, drug targets, and their relationships with tumor microenvironmental characteristics. In the transition from ovarian epithelial cells to the serous borderline, the FGFR3 gene in the "Estrogen Response Late" pathway, the ITGB2 gene in the "Cell Adhesion Molecule", the CD74 gene in the "Regulation of Cell Migration", and the IGF1 gene in the "Xenobiotic Metabolism" pathway were upregulated in the transition from borderline to LGSC. The ERBB4 gene in "Proteoglycan in Cancer", the AR gene in "Pathways in Cancer" and "Estrogen Response Early" pathways, were upregulated in the transition from ovarian epithelial cells to LGSC. In addition, SPP1 and ITGB2 genes were correlated with macrophage infiltration in the LGSC group. This research provides a valuable framework for the development of personalized therapeutic approaches in the context of LGSC, with the aim of improving patient outcomes and quality of life. Furthermore, the main goal of the current study is a preliminary study designed to generate in silico inferences, and it is also important to note that subsequent in vitro and in vivo studies will be necessary to confirm the results before considering these results as fully reliable.

Indexed as

borderlinegene coexpression networkin silico integrative data analysislow-grade serous ovarian cancer

Identifiers

PMID38534733
PMCPMC10968906
OpenAlexW4392154245

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.