Evidence map›Paper›PMID 38533854›Full record

ReviewBiochemical Society transactions2024

The application of single-molecule optical tweezers to study disease-related structural dynamics in RNA.

Tycho Marinus, Toshana L Foster, Katarzyna M Tych

Erratum issuedAbstract readReview
In one paragraph

Review in Biochemical Society transactions, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Roquin exhibits opposing effects on RNA stem-loop stability through its two ROQ domain binding sites.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

3 authors.

Tycho MarinusChemical Biology 1, University of Groningen, Nijenborgh 7, 9747 AG Groningen, The Netherlands.
Toshana L FosterFaculty of Medicine and Health Sciences, School of Veterinary Medicine and Science, University of Nottingham, LE12 5RD Loughborough, U.K.
Katarzyna M TychChemical Biology 1, University of Groningen, Nijenborgh 7, 9747 AG Groningen, The Netherlands.ORCID 0000-0001-9091-0507

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

RNA, a dynamic and flexible molecule with intricate three-dimensional structures, has myriad functions in disease development. Traditional methods, such as X-ray crystallography and nuclear magnetic resonance, face limitations in capturing real-time, single-molecule dynamics crucial for understanding RNA function. This review explores the transformative potential of single-molecule force spectroscopy using optical tweezers, showcasing its capability to directly probe time-dependent structural rearrangements of individual RNA molecules. Optical tweezers offer versatility in exploring diverse conditions, with the potential to provide insights into how environmental changes, ligands and RNA-binding proteins impact RNA behaviour. By enabling real-time observations of large-scale structural dynamics, optical tweezers emerge as an invaluable tool for advancing our comprehension of RNA structure and function. Here, we showcase their application in elucidating the dynamics of RNA elements in virology, such as the pseudoknot governing ribosomal frameshifting in SARS-CoV-2.

Indexed as

COVID-19Nucleic Acid ConformationOptical TweezersSARS-CoV-2Single Molecule ImagingFrameshifting, RibosomalHumansRNARNA-Binding ProteinsRNA, ViralRNARNA-Binding ProteinsRNA, Viraloptical tweezersRNAsingle-molecule

Identifiers

PMID38533854
PMCPMC11088911

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.