Evidence map›Paper›PMID 38532481›Full record

ArticlePlant methods2024

Early detection of dark-affected plant mechanical responses using enhanced electrical signals.

Hongping Li, Nikou Fotouhi, Fan Liu, Hongchao Ji, Qian Wu

Abstract read
In one paragraph

Article in Plant methods, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

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3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Review
  2. Harnessing Fungi Signaling in Living Composites.Global challenges (Hoboken, NJ) · 2024
    Article
4 · The record

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PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Hongping LiCollege of Computer Science and Technology (College of Data Science), Taiyuan University of Technology, Jinzhong, 030600, Shanxi, China.
Nikou FotouhiDesai Sethi Urology Institute, Sylvester Comprehensive Cancer Center, University of Miami Miller School of Medicine, Miami, FL, 33136, USA.
Fan LiuCollege of Computer Science and Technology (College of Data Science), Taiyuan University of Technology, Jinzhong, 030600, Shanxi, China. liufan@tyut.edu.cn.
Hongchao JiShenzhen Branch, Guangdong Laboratory of Lingnan Modern Agriculture, Key Laboratory of Synthetic Biology, Ministry of Agriculture and Rural Affairs, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen, 518120, Guangdong, China. jihongchao@caas.cn.
Qian WuShenzhen Branch, Guangdong Laboratory of Lingnan Modern Agriculture, Key Laboratory of Synthetic Biology, Ministry of Agriculture and Rural Affairs, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen, 518120, Guangdong, China. wuqian01@caas.cn.

Funding

National Natural Science Foundation of China 32200243
6 · The paper itself

Abstract

backgroundMechanical damage to plants triggers local and systemic electrical signals that are eventually decoded into plant defense responses. These responses are constantly affected by other environmental stimuli in nature, for instance, light fluctuation. In recent years, studies on decoding plant electrical signals powered by various machine learning models are increasing in a sense of early prediction or detection of different environmental stresses that threaten plant growth or crop yields. However, the main bottleneck is the low-throughput nature of plant electrical signals, making it challenging to obtain a substantial amount of training data. Consequently, training these models with small datasets often leads to unsatisfactory performance.

resultsIn the present work, we set out to decode wound-induced electrical signals (also termed slow wave potentials, SWPs) from plants that are deprived of light to different extents. Using non-invasive electrophysiology, we separately collected sets of local and distal SWPs from the treated plants. Then, we proposed a workflow based on few-shot learning to automatically identify SWPs. This workflow incorporates data preprocessing, feature extraction, data augmentation and classifier training. We established the integral and the first-order derivative as features for efficiently classifying SWPs. We then proposed an Adversarial Autoencoder (AAE) structure to augment the SWP samples. Combining them, the Random Forest classifier allowed remarkable classification accuracies of 0.99 for both local and systemic SWPs. In addition, in comparison to two other reported methods, our proposed AAE structure enabled better classification results using our tested features and classifiers.

conclusionsThe results of this study establish new features for efficiently classifying wound-induced electrical signals, which allow for distinguishing dark-affected local and systemic plant wound responses. We also propose a new data augmentation structure to generate virtual plant electrical signals. The methods proposed in this study could be further applied to build models for crop plants using electrical signals as inputs, and also to process other small-scale signals.

Indexed as

ClassificationData augmentationEnvironmental stressMachine learningPlant electrical signal

Identifiers

PMID38532481
PMCPMC10964643

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LicenceCC BY
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.