Evidence map›Paper›PMID 38532379›Full record

ArticleBMC plant biology2024

Integrative physiological, metabolomic, and transcriptomic analysis reveals the drought responses of two apple rootstock cultivars.

Xiaohan Li, Yitong Liu, Wei Hu, Baoying Yin, Bowen Liang, Zhongyong Li, Xueying Zhang, Jizhong Xu, Shasha Zhou

Open access · goldAbstract read
In one paragraph

Article in BMC plant biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
7.2field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 12 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 1 institution in 1 country.

Xiaohan LiCollege of Horticulture, Hebei Agricultural University, Baoding, Hebei, 071000, China.
Yitong LiuCollege of Horticulture, Hebei Agricultural University, Baoding, Hebei, 071000, China.
Wei HuCollege of Horticulture, Hebei Agricultural University, Baoding, Hebei, 071000, China.
Baoying YinCollege of Horticulture, Hebei Agricultural University, Baoding, Hebei, 071000, China.
Bowen LiangCollege of Horticulture, Hebei Agricultural University, Baoding, Hebei, 071000, China.
Zhongyong LiCollege of Horticulture, Hebei Agricultural University, Baoding, Hebei, 071000, China.
Xueying ZhangCollege of Horticulture, Hebei Agricultural University, Baoding, Hebei, 071000, China.
Jizhong XuCollege of Horticulture, Hebei Agricultural University, Baoding, Hebei, 071000, China. xjzhxw@126.com.
Shasha ZhouCollege of Horticulture, Hebei Agricultural University, Baoding, Hebei, 071000, China. zhoushasha198609@126.com.
Hebei Agricultural University · CN

Funding

Fund Project of Apple Innovation Team of Modern Agricultural Industry Technology Institution of Hebei Province HBCT2024150205Key Research and Development Plan Project of Hebei Province 21326308D-02-03National Natural Science Foundation of China 32002008
6 · The paper itself

Abstract

backgroundDrought is considered the main environmental factor restricting apple production and thus the development of the apple industry. Rootstocks play an important role in enhancing the drought tolerance of apple plants. Studies of the physiology have demonstrated that 'ZC9-3' is a strong drought-resistant rootstock, whereas 'Jizhen-2' is a weak drought-resistant rootstock. However, the metabolites in these two apple rootstock varieties that respond to drought stress have not yet been characterized, and the molecular mechanisms underlying their responses to drought stress remain unclear.

resultsIn this study, the physiological and molecular mechanisms underlying differences in the drought resistance of 'Jizhen-2' (drought-sensitive) and 'ZC9-3' (drought-resistant) apple rootstocks were explored. Under drought stress, the relative water content of the leaves was maintained at higher levels in 'ZC9-3' than in 'Jizhen-2', and the photosynthetic, antioxidant, and osmoregulatory capacities of 'ZC9-3' were stronger than those of 'Jizhen-2'. Metabolome analysis revealed a total of 95 and 156 differentially accumulated metabolites in 'Jizhen-2' and 'ZC9-3' under drought stress, respectively. The up-regulated metabolites in the two cultivars were mainly amino acids and derivatives. Transcriptome analysis revealed that there were more differentially expressed genes and transcription factors in 'ZC9-3' than in 'Jizhen-2' throughout the drought treatment. Metabolomic and transcriptomic analysis revealed that amino acid biosynthesis pathways play key roles in mediating drought resistance in apple rootstocks. A total of 13 metabolites, including L-α-aminoadipate, L-homoserine, L-threonine, L-isoleucine, L-valine, L-leucine, (2S)-2-isopropylmalate, anthranilate, L-tryptophan, L-phenylalanine, L-tyrosine, L-glutamate, and L-proline, play an important role in the difference in drought resistance between 'ZC9-3' and 'Jizhen-2'. In addition, 13 genes encoding O-acetylserine-(thiol)-lyase, S-adenosylmethionine synthetase, ketol-acid isomeroreductase, dihydroxyacid dehydratase, isopropylmalate isomerase, branched-chain aminotransferase, pyruvate kinase, 3-dehydroquinate dehydratase/shikimate 5-dehydrogenase, N-acetylglutamate-5-P-reductase, and pyrroline-5-carboxylate synthetase positively regulate the response of 'ZC9-3' to drought stress.

conclusionsThis study enhances our understanding of the response of apple rootstocks to drought stress at the physiological, metabolic, and transcriptional levels and provides key insights that will aid the cultivation of drought-resistant apple rootstock cultivars. Especially, it identifies key metabolites and genes underlying the drought resistance of apple rootstocks.

Indexed as

MalusAmino AcidsDroughtsGene Expression ProfilingGene Expression Regulation, PlantMetabolomeMetabolomicsStress, PhysiologicalAmino AcidsApple rootstocksDrought responsesMetabolomePhysiologicalTranscriptome

Identifiers

PMID38532379
PMCPMC10964572
OpenAlexW4393194554

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.