Evidence map›Paper›PMID 38532358›Full record

ReviewBMC genomics2024

Expansion and diversity of caspases in Mytilus coruscus contribute to larval metamorphosis and environmental adaptation.

Yanfei Cao, Linxiang Xu, Xinwei Xiong, Xiao Liu

Open access · goldAbstract readReview
In one paragraph

Review in BMC genomics, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
1.7field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 6 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Yanfei Cao *National Engineering Research Center For Marine Aquaculture, Zhejiang Ocean University, Zhoushan, Zhejiang, 316022, China.
Linxiang Xu *National Engineering Research Center For Marine Aquaculture, Zhejiang Ocean University, Zhoushan, Zhejiang, 316022, China.
Xinwei XiongNational Engineering Research Center For Marine Aquaculture, Zhejiang Ocean University, Zhoushan, Zhejiang, 316022, China.
Xiao LiuNational Engineering Research Center For Marine Aquaculture, Zhejiang Ocean University, Zhoushan, Zhejiang, 316022, China. liuxiao@zjou.edu.cn.
Zhejiang Ocean University · CN

Funding

National Natural Science Foundation of China 41676152
6 · The paper itself

Abstract

backgroundApoptosis is involved (directly and indirectly) in several physiological processes including tissue remodeling during the development, the turnover of immune cells, and a defense against harmful stimuli. The disordered apoptotic process participates in the pathogenesis of various diseases, such as neoplasms, and chronic inflammatory or systemic autoimmune diseases, which are associated with its inadequate regulation. Caspases are vital components of the apoptotic pathway that are involved in developmental and immune processes. However, genome-wide identification and functional analysis of caspase have not been conducted in Mytilus coruscus, which is an economically important bivalve.

resultsHere, 47 caspase genes were identified from the genomes of M. coruscus, and the expansion of caspase-2/9 and caspase-3/6/7 genes were observed. Tandem duplication acts as an essential driver of gene expansion. The expanded caspase genes were highly diverse in terms of sequence, domain structure, and spatiotemporal expression profiles, suggesting their functional differentiation. The high expression of the expanded caspase genes at the pediveliger larvae stage and the result of apoptosis location in the velum suggest that the apoptosis mediated by them plays a critical role in the metamorphosis of M. coruscus larvae. In gill, caspase genes respond differently to the challenge of different strains, and most caspase-2/9 and caspase-3/6/7 genes were induced by copper stress, whereas caspase-8/10 genes were suppressed. Additionally, most caspase genes were upregulated in the mantle under ocean acidification which could weaken the biomineralization capacity of the mantle tissue.

conclusionsThese results provide a comprehensive overview of the evolution and function of the caspase family and enhanced the understanding of the biological function of caspases in M. coruscus larval development and response to biotic and abiotic challenges.

Indexed as

CaspasesMytilusAnimalsCaspase 2Caspase 3Hydrogen-Ion ConcentrationSeawaterCaspase 2Caspase 3CaspasesApoptosisCaspaseFunctional differentiationGene expansionMytilus coruscusTandem duplication

Identifiers

PMID38532358
PMCPMC10967218
OpenAlexW4393230317

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.