Evidence map›Paper›PMID 38532103›Full record

ArticleBritish journal of cancer2024

Identification of unique rectal cancer-specific subtypes.

Batuhan Kisakol, Anna Matveeva, Manuela Salvucci, Alexander Kel, Elizabeth McDonough, Fiona Ginty, Daniel B Longley, Jochen H M Prehn

Open access · hybridAbstract read
In one paragraph

Article in British journal of cancer, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.8field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 3 citations in OpenAlex.

  1. Article
  2. Prognostic and predictive value of AXL and C-MET in patients with rectal cancer.Arquivos brasileiros de cirurgia digestiva : ABCD = Brazilian archives of digestive surgery · 2026
    Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 4 countries.

Batuhan KisakolDepartment of Physiology and Medical Physics, Royal College of Surgeons in Ireland, Dublin, 2, Ireland.
Anna MatveevaDepartment of Physiology and Medical Physics, Royal College of Surgeons in Ireland, Dublin, 2, Ireland.
Manuela SalvucciDepartment of Physiology and Medical Physics, Royal College of Surgeons in Ireland, Dublin, 2, Ireland.
Alexander KelgeneXplain GmbH, Wolfenbüttel, Germany.
Elizabeth McDonoughGE Research, Niskayuna, NY, 12309, USA.ORCID 0000-0001-7524-8260
Fiona GintyGE Research, Niskayuna, NY, 12309, USA.
Daniel B LongleyCentre for Cancer Research & Cell Biology, Queen's University Belfast, Belfast, Northern Ireland, UK.
Jochen H M PrehnDepartment of Physiology and Medical Physics, Royal College of Surgeons in Ireland, Dublin, 2, Ireland. jprehn@rcsi.ie.ORCID 0000-0003-3479-7794
Royal College of Surgeons in Ireland · IEGE Global Research (United States) · USGeneXplain (Germany) · DEQueen's University Belfast · GB

Funding

Systems Modeling of Tumor Heterogeneity and Therapy Response in Colorectal CancerR01CA208179 · NCI · GENERAL ELECTRIC GLOBAL RESEARCH CTR · PI GINTY, FIONA · 2017 to 2021
$3.5M
EC | EU Framework Programme for Research and Innovation H2020 | H2020 Priority Excellent Science | H2020 Marie Skłodowska-Curie Actions (H2020 Excellent Science - Marie Skłodowska-Curie Actions) H2020-MSCA-COFUND-2019-945385NCI NIH HHS R01 CA208179PHA | Health and Social Care Research and Development Division (HCS R&D) STL/5715/15Science Foundation Ireland (SFI) 16/US/3301Science Foundation Ireland (SFI) 18/CRT/6214U.S. Department of Health & Human Services | NIH | National Cancer Institute (NCI) R01CA208179
6 · The paper itself

Abstract

backgroundExisting colorectal cancer subtyping methods were generated without much consideration of potential differences in expression profiles between colon and rectal tissues. Moreover, locally advanced rectal cancers at resection often have received neoadjuvant chemoradiotherapy which likely has a significant impact on gene expression.

methodsWe collected mRNA expression profiles for rectal and colon cancer samples (n = 2121). We observed that (i) Consensus Molecular Subtyping (CMS) had a different prognosis in treatment-naïve rectal vs. colon cancers, and (ii) that neoadjuvant chemoradiotherapy exposure produced a strong shift in CMS subtypes in rectal cancers. We therefore clustered 182 untreated rectal cancers to find rectal cancer-specific subtypes (RSSs).

resultsWe identified three robust subtypes. We observed that RSS1 had better, and RSS2 had worse disease-free survival. RSS1 showed high expression of MYC target genes and low activity of angiogenesis genes. RSS2 exhibited low regulatory T cell abundance, strong EMT and angiogenesis signalling, and high activation of TGF-β, NF-κB, and TNF-α signalling. RSS3 was characterised by the deactivation of EGFR, MAPK and WNT pathways.

conclusionsWe conclude that RSS subtyping allows for more accurate prognosis predictions in rectal cancers than CMS subtyping and provides new insight into targetable disease pathways within these subtypes.

Indexed as

Rectal NeoplasmsAgedColonic NeoplasmsDisease-Free SurvivalFemaleGene Expression ProfilingGene Expression Regulation, NeoplasticHumansMaleMiddle AgedNeoadjuvant TherapyPrognosis

Identifiers

PMID38532103
PMCPMC11130168
OpenAlexW4393183265

What OpenQuestion holds

Textmetadata
LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.