Evidence map›Paper›PMID 38531874›Full record

ArticleNature communications2024

Profiling the colonic mucosal response to fecal microbiota transplantation identifies a role for GBP5 in colitis in humans and mice.

Laurence D W Luu, Abhimanu Pandey, Sudarshan Paramsothy, Chinh Ngo, Natalia Castaño-Rodríguez, Cheng Liu, Michael A Kamm, Thomas J Borody, Si Ming Man, Nadeem O Kaakoush

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
6.2field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 16 citations in OpenAlex.

  1. Review
  2. Gut microbiota in health and disease.Molecular biomedicine · 2026
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 6 institutions in 1 country.

Laurence D W Luu *School of Biomedical Sciences, UNSW, Sydney, NSW, 2052, Australia.ORCID http://orcid.org/0000-0003-2516-2121
Abhimanu Pandey *The John Curtin School of Medical Research, The Australian National University, Canberra, ACT, 2601, Australia.ORCID http://orcid.org/0000-0002-2367-3422
Sudarshan Paramsothy *Concord Clinical School, The University of Sydney, Sydney, NSW, 2139, Australia.ORCID http://orcid.org/0000-0002-9097-6028
Chinh NgoThe John Curtin School of Medical Research, The Australian National University, Canberra, ACT, 2601, Australia.
Natalia Castaño-RodríguezSchool of Biotechnology and Biomolecular Sciences, UNSW, Sydney, NSW, 2052, Australia.ORCID http://orcid.org/0000-0001-8819-8872
Cheng LiuConjoint Gastroenterology Laboratory, QIMR Berghofer Medical Research Institute, Herston, QLD, QLD, Australia.
Michael A KammDepartment of Gastroenterology, St Vincent's Hospital, Melbourne, VIC, 3065, Australia.
Thomas J BorodyCentre for Digestive Diseases, Sydney, NSW, 2046, Australia.ORCID http://orcid.org/0000-0002-0519-4698
Si Ming ManThe John Curtin School of Medical Research, The Australian National University, Canberra, ACT, 2601, Australia.ORCID http://orcid.org/0000-0002-5079-2857
Nadeem O KaakoushSchool of Biomedical Sciences, UNSW, Sydney, NSW, 2052, Australia. n.kaakoush@unsw.edu.au.ORCID http://orcid.org/0000-0003-4017-1077
Australian National University · AUUNSW Sydney · AUCentre For Digestive Diseases · AUMater Health Services · AUThe University of Melbourne · AUThe University of Sydney · AU

Funding

Crohn's and Colitis Foundation (Crohn's & Colitis Foundation) 988415Crohn's and Colitis Foundation (Crohn's & Colitis Foundation) IBD-0391RDepartment of Health | National Health and Medical Research Council (NHMRC) APP2002686Department of Health | National Health and Medical Research Council (NHMRC) APP2011047
6 · The paper itself

Abstract

Host molecular responses to fecal microbiota transplantation (FMT) in ulcerative colitis are not well understood. Here, we profile the human colonic mucosal transcriptome prior to and following FMT or placebo to identify molecules regulated during disease remission. FMT alters the transcriptome above the effect of placebo (n = 75 vs 3 genes, q < 0.05), including modulation of structural, metabolic and inflammatory pathways. This response is attributed to responders with no consistency observed in non-responders. Regulated pathways in responders include tight junctions, calcium signalling and xenobiotic metabolism. Genes significantly regulated longitudinally in responders post-FMT could discriminate them from responders and non-responders at baseline and non-responders post-FMT, with GBP5 and IRF4 downregulation being associated with remission. Female mice with a deletion of GBP5 are more resistant to developing colitis than their wild-type littermates, showing higher colonic IRF4 phosphorylation. The colonic mucosal response discriminates UC remission following FMT, with GBP5 playing a detrimental role in colitis.

Indexed as

Colitis, UlcerativeFecal Microbiota TransplantationAnimalsFecesFemaleGTP-Binding ProteinsHumansIntestinal MucosaMiceTreatment OutcomeGBP5 protein, humanGbp5 protein, mouseGTP-Binding Proteins

Identifiers

PMID38531874
PMCPMC10965925
OpenAlexW4393195754

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.