Evidence map›Paper›PMID 38528620›Full record

ArticleGenome biology2024

Eukaryotic-driven directed evolution of Cas9 nucleases.

Giulia Vittoria Ruta, Matteo Ciciani, Eyemen Kheir, Michele Domenico Gentile, Simone Amistadi, Antonio Casini, Anna Cereseto

Open access · goldAbstract read
In one paragraph

Article in Genome biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
2.6field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 11 citations in OpenAlex.

  1. Article
  2. In vivo genome editing with a novel Cj4Cas9.Communications biology · 2025
    Article
  3. Review
  4. Rationally designedMolecular therapy. Nucleic acids · 2024
    Article
  5. Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 2 countries.

Giulia Vittoria RutaLaboratory of Molecular Virology, Department CIBIO, University of Trento, Trento, Italy. giuliavittoria.ruta@unitn.it.
Matteo CicianiLaboratory of Molecular Virology, Department CIBIO, University of Trento, Trento, Italy.
Eyemen KheirLaboratory of Molecular Virology, Department CIBIO, University of Trento, Trento, Italy.
Michele Domenico GentileLaboratory of Molecular Virology, Department CIBIO, University of Trento, Trento, Italy.
Simone AmistadiLaboratory of Molecular Virology, Department CIBIO, University of Trento, Trento, Italy.
Antonio CasiniAlia Therapeutics S.R.L, Trento, Italy.
Anna CeresetoLaboratory of Molecular Virology, Department CIBIO, University of Trento, Trento, Italy. anna.cereseto@unitn.it.ORCID 0000-0003-4453-2597
University of Trento · ITInserm · FR

Funding

Horizon 2020 825825HORIZON EUROPE European Innovation Council 01071041
6 · The paper itself

Abstract

backgroundFurther advancement of genome editing highly depends on the development of tools with higher compatibility with eukaryotes. A multitude of described Cas9s have great potential but require optimization for genome editing purposes. Among these, the Cas9 from Campylobacter jejuni, CjCas9, has a favorable small size, facilitating delivery in mammalian cells. Nonetheless, its full exploitation is limited by its poor editing activity.

resultsHere, we develop a Eukaryotic Platform to Improve Cas Activity (EPICA) to steer weakly active Cas9 nucleases into highly active enzymes by directed evolution. The EPICA platform is obtained by coupling Cas nuclease activity with yeast auxotrophic selection followed by mammalian cell selection through a sensitive reporter system. EPICA is validated with CjCas9, generating an enhanced variant, UltraCjCas9, following directed evolution rounds. UltraCjCas9 is up to 12-fold more active in mammalian endogenous genomic loci, while preserving high genome-wide specificity.

conclusionsWe report a eukaryotic pipeline allowing enhancement of Cas9 systems, setting the ground to unlock the multitude of RNA-guided nucleases existing in nature.

Indexed as

CRISPR-Cas SystemsGene EditingAnimalsGenomeMammals

Identifiers

PMID38528620
PMCPMC10962177
OpenAlexW4393159098

What OpenQuestion holds

Textmetadata
LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.