Evidence map›Paper›PMID 38528119›Full record

ArticleNature chemical biology2024

Profiling the proximal proteome of the activated μ-opioid receptor.

Benjamin J Polacco, Braden T Lobingier, Emily E Blythe, Nohely Abreu, Prachi Khare, Matthew K Howard, Alberto J Gonzalez-Hernandez, Jiewei Xu, Qiongyu Li, Brandon Novy and 7 more

Open access · greenAbstract read
In one paragraph

Article in Nature chemical biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
6.8field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 31 citations in OpenAlex.

  1. A Spatiotemporal Atlas of the Androgen Receptor Proximal Interactome.bioRxiv : the preprint server for biology · 2026
    Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Review
  8. Precise andACS central science · 2025
    Article
  9. Article
  10. Review
  11. GPCR drug discovery: new agents, targets and indications.Nature reviews. Drug discovery · 2025
    Review
  12. Article
  13. Pain Signaling by GPCRs and RTKs.Trends in pharmacological sciences · 2025
    Review
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 5 institutions in 1 country.

Benjamin J Polacco *Quantitative Biosciences Institute (QBI), University of California, San Francisco, CA, USA.ORCID http://orcid.org/0000-0003-1570-9234
Braden T Lobingier *Department of Chemical Physiology and Biochemistry, Oregon Health and Sciences University, Portland, OR, USA.
Emily E BlytheQuantitative Biosciences Institute (QBI), University of California, San Francisco, CA, USA.ORCID http://orcid.org/0000-0001-6363-2644
Nohely AbreuDepartment of Biochemistry, Weill Cornell Medicine, New York, NY, USA.ORCID http://orcid.org/0000-0002-6733-7607
Prachi KhareQuantitative Biosciences Institute (QBI), University of California, San Francisco, CA, USA.
Matthew K HowardDepartment of Bioengineering and Therapeutic Sciences, University of California San Francisco, San Francisco, CA, USA.ORCID http://orcid.org/0000-0002-2128-2065
Alberto J Gonzalez-HernandezDepartment of Biochemistry, Weill Cornell Medicine, New York, NY, USA.ORCID http://orcid.org/0000-0002-2817-2475
Jiewei XuQuantitative Biosciences Institute (QBI), University of California, San Francisco, CA, USA.
Qiongyu LiQuantitative Biosciences Institute (QBI), University of California, San Francisco, CA, USA.
Brandon NovyDepartment of Chemical Physiology and Biochemistry, Oregon Health and Sciences University, Portland, OR, USA.
Zun Zar Chi NaingQuantitative Biosciences Institute (QBI), University of California, San Francisco, CA, USA.
Brian K ShoichetQuantitative Biosciences Institute (QBI), University of California, San Francisco, CA, USA.ORCID http://orcid.org/0000-0002-6098-7367
Willow Coyote-MaestasQuantitative Biosciences Institute (QBI), University of California, San Francisco, CA, USA.
Joshua LevitzDepartment of Biochemistry, Weill Cornell Medicine, New York, NY, USA.ORCID http://orcid.org/0000-0002-8169-6323
Nevan J KroganQuantitative Biosciences Institute (QBI), University of California, San Francisco, CA, USA.ORCID http://orcid.org/0000-0003-4902-337X
Mark Von ZastrowQuantitative Biosciences Institute (QBI), University of California, San Francisco, CA, USA. mark.vonzastrow@ucsf.edu.ORCID http://orcid.org/0000-0003-1375-6926
Ruth HüttenhainQuantitative Biosciences Institute (QBI), University of California, San Francisco, CA, USA. ruthh@stanford.edu.ORCID http://orcid.org/0000-0002-0896-5910
Gladstone Institutes · USUniversity of California, San Francisco · USCornell University · USOregon Health & Science University · USQB3 · US

Funding

The Psychiatric Cell Map Initiative: Connecting Genomics, Subcellular Networks, and Higher Order PhenotypesU01MH115747 · NIMH · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI KAMPMANN, MARTIN, KROGAN, NEVAN J · 2018 to 2022
$19.6M
Project 3: Control of cardiac transcription by MEF2 and myocardinP01HL146366 · NHLBI · J. DAVID GLADSTONE INSTITUTES · PI BLACK, BRIAN L · 2019 to 2023
$13.7M
PROTEINS REGULATING ENDOCYTOSIS OF OPIOID RECEPTORSR01DA012864 · NIDA · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI Mark E Von Zastrow · 2000 to 2026
$7.9M
Tetrad: Genetics, Cell Biology, Biochemistry and Molecular Biology Training GrantT32GM139786 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI Natalia Jura, David Paul Toczyski · 2021 to 2026
$6.5M
Regulation of prefrontal cortical circuit function and reward-seeking behavior by stress-induced dendritic spine remodelingR01MH118451 · NIMH · WEILL MEDICAL COLL OF CORNELL UNIV · PI Joshua Levitz, Conor M Liston · 2019 to 2026
$5.5M
Membrane Trafficking of Opioid and Adrenergic ReceptorsR01DA010711 · NIDA · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI VONZASTROW, MARK E · 2014 to 2023
$4.6M
Spatiotemporal signaling and trafficking of the mu-opioid receptorR01DA056354 · NIDA · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI Ruth Huttenhain · 2022 to 2026
$2.9M
Molecular Mechanisms of Synaptic G Protein-Coupled ReceptorsR35GM124731 · NIGMS · WEILL MEDICAL COLL OF CORNELL UNIV · PI LEVITZ, JOSHUA · 2017 to 2021
$2.1M
Mechanisms of Regulation of Neuronal GPCRs by KCTDsR01NS131463 · NINDS · WEILL MEDICAL COLL OF CORNELL UNIV · PI Andrew Kruse, Joshua Levitz · 2024 to 2026
$2.0M
GPR88 localization to primary cilia and its impact on striatal cAMP signalingR01MH120212 · NIMH · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI VONZASTROW, MARK E · 2019 to 2023
$2.0M
Genetically-Targeted Photo-Pharmacology for Native Opioid ReceptorsR33DA051529 · NIDA · WEILL MEDICAL COLL OF CORNELL UNIV · PI LEVITZ, JOSHUA, TRAUNER, DIRK HARTWIG · 2023 to 2024
$1.2M
Molecular basis for ligand and cell type specific regulation of opioid receptorsR00DA043607 · NIDA · OREGON HEALTH & SCIENCE UNIVERSITY · PI LOBINGIER, BRADEN · 2019 to 2021
$747k
NCI NIH HHS F32 CA260118NHLBI NIH HHS P01 HL146366NIDA NIH HHS K99 DA043607NIDA NIH HHS R00 DA043607NIDA NIH HHS R01 DA010711NIDA NIH HHS R01 DA012864NIDA NIH HHS R01 DA056354NIDA NIH HHS R33 DA051529NIGMS NIH HHS K99 GM151441NIGMS NIH HHS R35 GM124731NIGMS NIH HHS T32 GM139786NIMH NIH HHS R01 MH118451NIMH NIH HHS R01 MH120212NIMH NIH HHS U01 MH115747NINDS NIH HHS R01 NS131463United States Department of Defense | Defense Advanced Research Projects Agency (DARPA) HR0011-19-2-0020United States Department of Defense | Defense Advanced Research Projects Agency (DARPA) HR0011-20-2-0029U.S. Department of Health & Human Services | NIH | National Heart, Lung, and Blood Institute (NHLBI) P01HL146366U.S. Department of Health & Human Services | NIH | National Institute of General Medical Sciences (NIGMS) 5T32GM139786U.S. Department of Health & Human Services | NIH | National Institute of General Medical Sciences (NIGMS) K99GM151441U.S. Department of Health & Human Services | NIH | National Institute of General Medical Sciences (NIGMS) R35GM124731U.S. Department of Health & Human Services | NIH | National Institute of Mental Health (NIMH) 1U01MH115747U.S. Department of Health & Human Services | NIH | National Institute of Mental Health (NIMH) MH120212U.S. Department of Health & Human Services | NIH | National Institute on Drug Abuse (NIDA) DA012864U.S. Department of Health & Human Services | NIH | National Institute on Drug Abuse (NIDA) DA043607U.S. Department of Health & Human Services | NIH | National Institute on Drug Abuse (NIDA) R01DA010711U.S. Department of Health & Human Services | NIH | National Institute on Drug Abuse (NIDA) R01DA056354
6 · The paper itself

Abstract

The μ-opioid receptor (μOR) represents an important target of therapeutic and abused drugs. So far, most understanding of μOR activity has focused on a subset of known signal transducers and regulatory molecules. Yet μOR signaling is coordinated by additional proteins in the interaction network of the activated receptor, which have largely remained invisible given the lack of technologies to interrogate these networks systematically. Here we describe a proteomics and computational approach to map the proximal proteome of the activated μOR and to extract subcellular location, trafficking and functional partners of G-protein-coupled receptor (GPCR) activity. We demonstrate that distinct opioid agonists exert differences in the μOR proximal proteome mediated by endocytosis and endosomal sorting. Moreover, we identify two new μOR network components, EYA4 and KCTD12, which are recruited on the basis of receptor-triggered G-protein activation and might form a previously unrecognized buffering system for G-protein activity broadly modulating cellular GPCR signaling.

Indexed as

ProteomeProteomicsReceptors, Opioid, muEndocytosisHEK293 CellsHumansReceptors, G-Protein-CoupledSignal TransductionProteomeReceptors, G-Protein-CoupledReceptors, Opioid, mu

Identifiers

PMID38528119
PMCPMC11365811
OpenAlexW4393153099

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.