Evidence map›Paper›PMID 38527110›Full record

ArticleVeterinary medicine and science2024

Genetic analysis of PALB2 gene WD40 domain in canine mammary tumour patients.

Özge Şebnem Çıldır, Özge Özmen, Selim Kul, Ali Rişvanlı, Gözde Özalp, Ahmet Sabuncu, Oğuz Kul

Open access · goldAbstract read
In one paragraph

Article in Veterinary medicine and science, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.4field-weighted citation impact, top 39% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 1 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 2 countries.

Özge Şebnem ÇıldırDepartment of Genetics, Faculty of Veterinary Medicine, Kafkas University, Kars, Türkiye.ORCID 0000-0001-7070-4212
Özge ÖzmenDepartment of Genetics, Faculty of Veterinary Medicine, Ankara University, Ankara, Türkiye.ORCID 0000-0002-8577-7323
Selim KulDepartment of Animal Breeding, Faculty of Veterinary Medicine, Yozgat Bozok University, Yozgat, Türkiye.ORCID 0000-0003-3032-8050
Ali RişvanlıDepartment of Obstetrics and Gynecology, Faculty of Veterinary Medicine, Fırat University, Elazığ, Türkiye.ORCID 0000-0001-5653-0025
Gözde ÖzalpDepartment of Obstetrics and Gynecology, Faculty of Veterinary Medicine, Bursa Uludağ University, Bursa, Türkiye.ORCID 0000-0003-4694-6937
Ahmet SabuncuDepartment of Obstetrics and Gynecology, Faculty of Veterinary Medicine, İstanbul University, İstanbul, Türkiye.ORCID 0000-0002-9080-7056
Oğuz KulDepartment of Pathology, Faculty of Veterinary Medicine, Kırıkkale University, Kırıkkale, Türkiye.ORCID 0000-0002-1282-650X
University of Turku · FI

Funding

Ankara University 19L0239005Türkiye Bilimsel ve Teknolojik Araştırma Kurumu
6 · The paper itself

Abstract

backgroundDNA repair mechanisms are essential for tumorigenesis and disruption of HR mechanism is an important predisposing factor of human breast cancers (BC). PALB2 is an important part of the HR. There are similarities between canine mammary tumours (CMT) and BCs. As its human counterpart, PALB2 mutations could be a predisposing factor of CMT.

objectivesIn this study, we aimed to investigate the impacts of PALB2 variants on tumorigenesis and canine mammary tumor (CMT) malignancy.

methodsWe performed Sanger sequencing to detect germline mutations in the WD40 domain of the canine PALB2 gene in CMT patients. We conducted in silico analysis to investigate the variants, and compared the germline PALB2 mutations in humans that cause breast cancer (BC) with the variants detected in dogs with CMT.

resultsWe identified an intronic (c.3096+8C>G) variant, two exonic (p.A1050V and p.R1354R) variants, and a 3' UTR variant (c.4071T>C). Of these, p.R1354R and c.4071T>C novel variants were identified for the first time in this study. We found that the p.A1050V mutation had a significant effect. However, we could not determine sufficient similarity due to the differences in nucleotide/amino acid sequences between two species. Nonetheless, possible variants of human sequences in the exact location as their dog counterparts are associated with several cancer types, implying that the variants could be crucial for tumorigenesis in dogs. Our results did not show any effect of the variants on tumor malignancy.

conclusionsThe current project is the first study investigating the relationship between the PALB2 gene WD40 domain and CMTs. Our findings will contribute to a better understanding of the pathogenic mechanism of the PALB2 gene in CMTs. In humans, variant positions in canines have been linked to cancer-related phenotypes such as familial BC, endometrial tumor, and hereditary cancer predisposition syndrome. The results of bioinformatics analyses should be investigated through functional tests or case-control studies.

Indexed as

Dog DiseasesFanconi Anemia Complementation Group N ProteinMammary Neoplasms, AnimalAnimalsBreast NeoplasmsCarcinogenesisDogsFemaleGenetic Predisposition to DiseaseHumansMutationTumor Suppressor ProteinsFanconi Anemia Complementation Group N ProteinPALB2 protein, humanTumor Suppressor Proteinscanine mammary tumourPALB2partner and localizer of BRCA2WD40 domain

Identifiers

PMID38527110
PMCPMC10962921
OpenAlexW4393164395

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.