Evidence map›Paper›PMID 38526325›Full record

ArticleThe Journal of cell biology2024

m6Am methyltransferase PCIF1 negatively regulates ciliation by inhibiting BICD2 expression.

Shanshan Xie, Wenjun Kuang, Mengzhe Guo, Feng Yang, Hao Jin, Xiying Chen, Li Yi, Chunxiao Huo, Zhangqi Xu, Aifu Lin and 4 more

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of cell biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.9field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 8 citations in OpenAlex.

  1. Programmable RNA NAdvanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026
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  4. Introduction of human mMicrobial cell factories · 2025
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  6. Cap-Specific mCells · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 4 institutions in 1 country.

Shanshan Xie *Children's Hospital, National Clinical Research Center for Child Health, Zhejiang University School of Medicine, Hangzhou, China.ORCID 0000-0003-4294-8169
Wenjun Kuang *International Institutes of Medicine, The Fourth Affiliated Hospital, Zhejiang University School of Medicine, Yiwu, China.ORCID 0009-0000-5541-0144
Mengzhe Guo *School of Pharmacy, Xuzhou Medical University, Xuzhou, China.ORCID 0000-0001-8771-8987
Feng Yang *Children's Hospital, National Clinical Research Center for Child Health, Zhejiang University School of Medicine, Hangzhou, China.ORCID 0009-0005-7411-0522
Hao JinDepartment of Cell Biology, Zhejiang University School of Medicine, Hangzhou, China.ORCID 0000-0003-1262-1675
Xiying ChenDepartment of Cell Biology, Zhejiang University School of Medicine, Hangzhou, China.ORCID 0009-0002-2066-5897
Li YiDepartment of Cell Biology, Zhejiang University School of Medicine, Hangzhou, China.ORCID 0009-0004-3322-9327
Chunxiao HuoDepartment of Cell Biology, Zhejiang University School of Medicine, Hangzhou, China.ORCID 0009-0008-0442-4608
Zhangqi XuChildren's Hospital, National Clinical Research Center for Child Health, Zhejiang University School of Medicine, Hangzhou, China.ORCID 0009-0005-0187-3211
Aifu LinMOE Laboratory of Biosystem Homeostasis and Protection, College of Life Sciences, Zhejiang University, Hangzhou, China.ORCID 0000-0002-3968-3617
Wei LiuMetabolic Medicine Center, International Institutes of Medicine and the Fourth Affiliated Hospital, Zhejiang University School of Medicine, Yiwu, China.ORCID 0000-0002-2046-6225
Jianhua MaoChildren's Hospital, National Clinical Research Center for Child Health, Zhejiang University School of Medicine, Hangzhou, China.ORCID 0000-0002-6076-3806
Qiang ShuChildren's Hospital, National Clinical Research Center for Child Health, Zhejiang University School of Medicine, Hangzhou, China.ORCID 0000-0002-4106-6255
Tianhua ZhouDepartment of Cell Biology, Zhejiang University School of Medicine, Hangzhou, China.ORCID 0000-0002-1791-2124
Zhejiang University · CNChildren's Hospital of Zhejiang University · CNZhejiang International Studies University · CNXuzhou Medical College · CN

Funding

National Key Research and Development Program of China 2019YFA0802202National Natural Science Foundation of China U21A20197
6 · The paper itself

Abstract

N6, 2'-O-dimethyladenosine (m6Am) is a widespread RNA modification catalyzed by the methyltransferase PCIF1 (phosphorylated CTD interacting factor 1). Despite its prevalence, the biological functions of m6Am in RNA remain largely elusive. Here, we report a critical role of PCIF1-dependent m6Am RNA modification in ciliogenesis in RPE-1 cells. Our findings demonstrate that PCIF1 acts as a negative regulator of ciliation through its m6Am methyltransferase activity. A quantitative proteomic analysis identifies BICD2 as a downstream target of PCIF1, with PCIF1 depletion resulting in a significant increase in BICD2 levels. BICD2 depletion leads to a significant reduction in ciliation. Crucially, the ciliary phenotype in PCIF1-depleted cells is reversed upon BICD2 knockdown. Further investigations reveal that PCIF1 regulates BICD2 protein levels through its m6Am catalytic activity, which reduces the stability and translation efficiency of BICD2 mRNA. Single-base resolution LC-MS analysis identifies the m6Am site on BICD2 mRNA modified by PCIF1. These findings establish the essential involvement of PCIF1-dependent m6Am modification in ciliogenesis.

Indexed as

Adaptor Proteins, Signal TransducingLiquid Chromatography-Mass SpectrometryMicrotubule-Associated ProteinsNuclear ProteinsProteomicsCell LineHumansMethyltransferasesRNARNA, MessengerAdaptor Proteins, Signal TransducingBICD2 protein, humanMethyltransferasesMicrotubule-Associated ProteinsNuclear ProteinsPCIF1 protein, humanRNARNA, Messenger

Identifiers

PMID38526325
PMCPMC10965392
OpenAlexW4393152083

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.