Evidence map›Paper›PMID 38526198›Full record

ArticleBirth defects research2024

Genome-wide analysis of spina bifida risk variants in a case-control study from Bangladesh.

Gwen Tindula, Biju Issac, Sudipta Kumer Mukherjee, Sheikh Muhammad Ekramullah, D M Arman, Joynul Islam, Hafiza Sultana Suchanda, Liang Sun, Shira Rockowitz, David C Christiani and 2 more

Abstract read
In one paragraph

Article in Birth defects research, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Review
  2. Article
  3. Review
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Gwen TindulaDepartment of Neurology, Boston Children's Hospital, Boston, Massachusetts, USA.
Biju IssacResearch Computing, Information Technology, Boston Children's Hospital, Boston, Massachusetts, USA.
Sudipta Kumer MukherjeeDepartment of Paediatric Neurosurgery, National Institute of Neurosciences and Hospital (NINS), Dhaka, Bangladesh.
Sheikh Muhammad EkramullahDepartment of Paediatric Neurosurgery, National Institute of Neurosciences and Hospital (NINS), Dhaka, Bangladesh.
D M ArmanDepartment of Paediatric Neurosurgery, National Institute of Neurosciences and Hospital (NINS), Dhaka, Bangladesh.
Joynul IslamDepartment of Clinical Neurosurgery, National Institute of Neurosciences and Hospital (NINS), Dhaka, Bangladesh.
Hafiza Sultana SuchandaPediatric Neurosurgery Research Committee, National Institute of Neurosciences and Hospital (NINS), Dhaka, Bangladesh.
Liang SunResearch Computing, Information Technology, Boston Children's Hospital, Boston, Massachusetts, USA.
Shira RockowitzResearch Computing, Information Technology, Boston Children's Hospital, Boston, Massachusetts, USA.
David C ChristianiDepartment of Environmental Health, Harvard T.H. Chan School of Public Health, Boston, Massachusetts, USA.
Benjamin C WarfDepartment of Neurosurgery, Boston Children's Hospital, Boston, Massachusetts, USA.
Maitreyi MazumdarDepartment of Neurology, Boston Children's Hospital, Boston, Massachusetts, USA.

Funding

Translational Research Support CoreP30ES000002 · NIEHS · HARVARD UNIVERSITY (SCH OF PUBLIC HLTH) · PI JAIME ELIZABETH HART · 1985 to 2026
$44.6M
Genetic Analysis and Manipulation Core (GAEC)P50HD105351 · NICHD · BOSTON CHILDREN'S HOSPITAL · PI SCOTT Loren POMEROY, MUSTAFA SAHIN · 2021 to 2026
$9.4M
Translational Post-doctoral Training in NeurodevelopmentT32MH112510 · NIMH · BOSTON CHILDREN'S HOSPITAL · PI DAVID C GLAHN, CHARLES Alexander NELSON · 2017 to 2026
$2.6M
Interdisciplinary approaches for understanding how arsenic and micronutrients affect the epigenome to influence spina bifida riskR01ES034713 · NIEHS · BOSTON CHILDREN'S HOSPITAL · PI MAZUMDAR, MAITREYI · 2023 to 2025
$2.3M
Does arsenic increase risk of neural tube defects in a highly-exposed population?R01ES026317 · NIEHS · BOSTON CHILDREN'S HOSPITAL · PI MAZUMDAR, MAITREYI · 2016 to 2020
$2.2M
Examining tissue-specific DNA methylation after prenatal exposure to arsenic among infants with spina bifidaR21ES030784 · NIEHS · BOSTON CHILDREN'S HOSPITAL · PI MAZUMDAR, MAITREYI · 2020 to 2021
$497k
2019 International NTD ConferenceR13HD100191 · NICHD · BOSTON CHILDREN'S HOSPITAL · PI MAZUMDAR, MAITREYI · 2019 to 2019
$18k
NICHD NIH HHS P50 HD105351NICHD NIH HHS R13 HD100191NIEHS NIH HHS P30 ES000002NIEHS NIH HHS R01 ES026317NIEHS NIH HHS R01 ES034713NIEHS NIH HHS R21 ES030784NIMH NIH HHS T32 MH112510
6 · The paper itself

Abstract

backgroundHuman studies of genetic risk factors for neural tube defects, severe birth defects associated with long-term health consequences in surviving children, have predominantly been restricted to a subset of candidate genes in specific biological pathways including folate metabolism.

methodsIn this study, we investigated the association of genetic variants spanning the genome with risk of spina bifida (i.e., myelomeningocele and meningocele) in a subset of families enrolled from December 2016 through December 2022 in a case-control study in Bangladesh, a population often underrepresented in genetic studies. Saliva DNA samples were analyzed using the Illumina Global Screening Array. We performed genetic association analyses to compare allele frequencies between 112 case and 121 control children, 272 mothers, and 128 trios.

resultsIn the transmission disequilibrium test analyses with trios only, we identified three novel exonic spina bifida risk loci, including rs140199800 (SULT1C2, p = 1.9 × 10

conclusionsThis study identified three novel single nucleotide polymorphisms involved in biological pathways not previously associated with neural tube defects. The study warrants replication in larger groups to validate findings and to inform targeted prevention strategies.

Indexed as

MeningoceleNeural Tube DefectsSpinal DysraphismBangladeshCase-Control StudiesChildHumansBangladeshgenetic association analysisGlobal Screening Arrayneural tube defectsspina bifida

Identifiers

PMID38526198
PMCPMC10963057

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.