Evidence map›Paper›PMID 38525786›Full record

ArticleEpigenetics2024

DNA methylation markers for risk of metastasis in a cohort of men with localized prostate cancer.

Talar S Habeshian, Kimberly L Cannavale, Jeff M Slezak, Yu-Hsiang Shu, Gary W Chien, XuFeng Chen, Feng Shi, Kimberly D Siegmund, Stephen K Van Den Eeden, Jiaoti Huang and 1 more

Open access · diamondAbstract read
In one paragraph

Article in Epigenetics, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
1.3field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 3 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 1 country.

Talar S HabeshianDepartment of Research and Evaluation, Kaiser Permanente Southern California, Pasadena, CA, USA.ORCID 0000-0003-4504-7630
Kimberly L CannavaleDepartment of Research and Evaluation, Kaiser Permanente Southern California, Pasadena, CA, USA.ORCID 0000-0003-3892-9686
Jeff M SlezakDepartment of Research and Evaluation, Kaiser Permanente Southern California, Pasadena, CA, USA.ORCID 0000-0002-6108-9198
Yu-Hsiang ShuBiostatistics and Innovations, Biostatistics and Programming, Clinical Affairs, Inari Medical, CA, USA.
Gary W ChienDepartment of Urology, Los Angeles Medical Center, Kaiser Permanente Southern California, Los Angeles, CA, USA.
XuFeng ChenDepartment of Pathology, Duke University School of Medicine, Durham, NC, USA.
Feng ShiDepartment of Pathology, Duke University School of Medicine, Durham, NC, USA.
Kimberly D SiegmundDepartment of Population and Public Health Sciences, Keck School of Medicine, University of Southern California, Los Angeles, CA, USA.ORCID 0000-0001-7599-9726
Stephen K Van Den EedenDivision of Research, Kaiser Permanente Northern California, Oakland, CA, USA.
Jiaoti HuangDepartment of Pathology, Duke University School of Medicine, Durham, NC, USA.
Chun R ChaoDepartment of Research and Evaluation, Kaiser Permanente Southern California, Pasadena, CA, USA.ORCID 0000-0002-6072-4954
Kaiser Permanente · USDuke University · USUniversity of Southern California · US

Funding

Identification of DNA methylation markers for risk of metastasis in localized proR01CA181242 · NCI · KAISER FOUNDATION RESEARCH INSTITUTE · PI CHAO, CHUN R. · 2015 to 2019
$3.0M
NCI NIH HHS R01 CA181242
6 · The paper itself

Abstract

Accurately identifying life-threatening prostate cancer (PCa) at time of diagnosis remains an unsolved problem. We evaluated whether DNA methylation status of selected candidate genes can predict the risk of metastasis beyond clinical risk factors in men with untreated PCa. A nested case-control study was conducted among men diagnosed with localized PCa at Kaiser Permanente California between 01/01/1997-12/31/2006 who did not receive curative treatments. Cases were those who developed metastasis within 10 years from diagnosis. Controls were selected using density sampling. Ninety-eight candidate genes were selected from functional categories of cell cycle control, metastasis/tumour suppressors, cell signalling, cell adhesion/motility/invasion, angiogenesis, and immune function, and 41 from pluripotency genes. Cancer DNA from diagnostic biopsy blocks were extracted and analysed. Associations of methylation status were assessed using CpG site level and principal components-based analysis in conditional logistic regressions. In 215 cases and 404 controls, 27 candidate genes were found to be statistically significant in at least one of the two analytical approaches. The agreement between the methods was 25.9% (7 candidate genes, including 2 pluripotency markers). The DNA methylation status of several candidate genes was significantly associated with risk of metastasis in untreated localized PCa patients. These findings may inform future risk prediction models for PCa metastasis beyond clinical characteristics.

Indexed as

DNA MethylationProstatic NeoplasmsCase-Control StudiesHumansMaleRisk FactorsDNA methylationmetastasisProstate cancer

Identifiers

PMID38525786
PMCPMC10965114
OpenAlexW4393159254

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.