Evidence map›Paper›PMID 38523136›Full record

ArticleScientific reports2024

Ising-like model replicating time-averaged spiking behaviour of in vitro neuronal networks.

Cesar I N Sampaio Filho, Lucilla de Arcangelis, Hans J Herrmann, Dietmar Plenz, Patrick Kells, Tiago Lins Ribeiro, José S Andrade

Abstract read
In one paragraph

Article in Scientific reports, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Cesar I N Sampaio FilhoDepartamento de Física, Universidade Federal do Ceará, Fortaleza, 60451-970, Brazil. cesar@fisica.ufc.br.
Lucilla de ArcangelisDepartment of Mathematics and Physics, University of Campania "Luigi Vanvitelli", 81100, Caserta, Italy.
Hans J HerrmannDepartamento de Física, Universidade Federal do Ceará, Fortaleza, 60451-970, Brazil.
Dietmar PlenzSection on Critical Brain Dynamics, NIMH, Bethesda, MD, 20892, USA.
Patrick KellsSection on Critical Brain Dynamics, NIMH, Bethesda, MD, 20892, USA.
Tiago Lins RibeiroSection on Critical Brain Dynamics, NIMH, Bethesda, MD, 20892, USA.
José S AndradeDepartamento de Física, Universidade Federal do Ceará, Fortaleza, 60451-970, Brazil.

Funding

Neuronal Avalanches in the NeocortexZIAMH002797 · NIMH · NATIONAL INSTITUTE OF MENTAL HEALTH · PI PLENZ, DIETMAR · 2009 to 2025
$32.3M
Readout and control of spatiotemporal neuronal codes for behaviorU19NS107464 · NINDS · UNIVERSITY OF CHICAGO · PI SHOHAM, SHY · 2018 to 2022
$17.3M
BRAIN project (Plenz): Readout and Control of Spatiotemporal Neuronal Codes of BehaviorZIAMH002971 · NIMH · NATIONAL INSTITUTE OF MENTAL HEALTH · PI PLENZ, DIETMAR · 2019 to 2023
$882k
Division of the Intramural Research Program (DIRP), NIMH U19 NS107464-01Intramural NIH HHS ZIA MH002797Intramural NIH HHS ZIA MH002971NINDS NIH HHS U19 NS107464
6 · The paper itself

Abstract

We analyze time-averaged experimental data from in vitro activities of neuronal networks. Through a Pairwise Maximum-Entropy method, we identify through an inverse binary Ising-like model the local fields and interaction couplings which best reproduce the average activities of each neuron as well as the statistical correlations between the activities of each pair of neurons in the system. The specific information about the type of neurons is mainly stored in the local fields, while a symmetric distribution of interaction constants seems generic. Our findings demonstrate that, despite not being directly incorporated into the inference approach, the experimentally observed correlations among groups of three neurons are accurately captured by the derived Ising-like model. Within the context of the thermodynamic analogy inherent to the Ising-like models developed in this study, our findings additionally indicate that these models demonstrate characteristics of second-order phase transitions between ferromagnetic and paramagnetic states at temperatures above, but close to, unity. Considering that the operating temperature utilized in the Maximum-Entropy method is

Indexed as

NeuronsEntropyTemperatureThermodynamics

Identifiers

PMID38523136
PMCPMC11319664

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.