Evidence map›Paper›PMID 38521763›Full record

ArticleNature communications2024

Functional screening in human HSPCs identifies optimized protein-based enhancers of Homology Directed Repair.

Juan A Perez-Bermejo, Oghene Efagene, William M Matern, Jeffrey K Holden, Shaheen Kabir, Glen M Chew, Gaia Andreoletti, Eniola Catton, Craig L Ennis, Angelica Garcia and 25 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.4field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 6 citations in OpenAlex.

  1. Ultra-large targeted DNA integrations in primary human cells.bioRxiv : the preprint server for biology · 2026
    Article
  2. Article
  3. Review
  4. A differentiated β-globin gene replacement strategy uses heterologous introns to restore physiological expression.Molecular therapy : the journal of the American Society of Gene Therapy · 2025
    Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

35 authors at 1 institution in 1 country.

Juan A Perez-BermejoGraphite Bio, South San Francisco, CA, USA.ORCID http://orcid.org/0000-0001-7625-358X
Oghene EfageneGraphite Bio, South San Francisco, CA, USA.
William M MaternGraphite Bio, South San Francisco, CA, USA.ORCID http://orcid.org/0000-0001-9553-3771
Jeffrey K HoldenGraphite Bio, South San Francisco, CA, USA.
Shaheen KabirGraphite Bio, South San Francisco, CA, USA.
Glen M ChewGraphite Bio, South San Francisco, CA, USA.ORCID http://orcid.org/0000-0001-6186-4353
Gaia AndreolettiGraphite Bio, South San Francisco, CA, USA.ORCID http://orcid.org/0000-0002-0452-0009
Eniola CattonGraphite Bio, South San Francisco, CA, USA.
Craig L EnnisGraphite Bio, South San Francisco, CA, USA.
Angelica GarciaGraphite Bio, South San Francisco, CA, USA.
Trevor L GerstenbergGraphite Bio, South San Francisco, CA, USA.
Kaisle A HillGraphite Bio, South San Francisco, CA, USA.
Aayami JainGraphite Bio, South San Francisco, CA, USA.
Kristina KrassovskyGraphite Bio, South San Francisco, CA, USA.
Cassandra D LalisanGraphite Bio, South San Francisco, CA, USA.
Daniel LordGraphite Bio, South San Francisco, CA, USA.
B Joy QuejarroGraphite Bio, South San Francisco, CA, USA.
Jade Sales-LeeGraphite Bio, South San Francisco, CA, USA.
Meet ShahGraphite Bio, South San Francisco, CA, USA.
Brian J SilvaGraphite Bio, South San Francisco, CA, USA.ORCID http://orcid.org/0009-0009-2637-7723
Jason SkowronskiGraphite Bio, South San Francisco, CA, USA.
Yuri G StrukovGraphite Bio, South San Francisco, CA, USA.
Joshua ThomasGraphite Bio, South San Francisco, CA, USA.
Michael VerazGraphite Bio, South San Francisco, CA, USA.
Twaritha VijayGraphite Bio, South San Francisco, CA, USA.
Kirby A WallaceGraphite Bio, South San Francisco, CA, USA.
Yue YuanGraphite Bio, South San Francisco, CA, USA.ORCID http://orcid.org/0009-0009-7221-8299
Jane L GroganGraphite Bio, South San Francisco, CA, USA.ORCID http://orcid.org/0000-0003-4062-7134
Beeke WienertGraphite Bio, South San Francisco, CA, USA.
Premanjali LahiriGraphite Bio, South San Francisco, CA, USA.
Sebastian TreuschGraphite Bio, South San Francisco, CA, USA.
Daniel P DeverGraphite Bio, South San Francisco, CA, USA.
Vanessa B SorosGraphite Bio, South San Francisco, CA, USA.
James R PartridgeGraphite Bio, South San Francisco, CA, USA.
Kristen L SeimGraphite Bio, South San Francisco, CA, USA. scicomms@graphitebio.com.ORCID http://orcid.org/0009-0001-1578-4747
Fondazione GraphiTech · IT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Homology Directed Repair (HDR) enables precise genome editing, but the implementation of HDR-based therapies is hindered by limited efficiency in comparison to methods that exploit alternative DNA repair routes, such as Non-Homologous End Joining (NHEJ). In this study, we develop a functional, pooled screening platform to identify protein-based reagents that improve HDR in human hematopoietic stem and progenitor cells (HSPCs). We leverage this screening platform to explore sequence diversity at the binding interface of the NHEJ inhibitor i53 and its target, 53BP1, identifying optimized variants that enable new intermolecular bonds and robustly increase HDR. We show that these variants specifically reduce insertion-deletion outcomes without increasing off-target editing, synergize with a DNAPK inhibitor molecule, and can be applied at manufacturing scale to increase the fraction of cells bearing repaired alleles. This screening platform can enable the discovery of future gene editing reagents that improve HDR outcomes.

Indexed as

CRISPR-Cas SystemsRecombinational DNA RepairDNA End-Joining RepairDNA RepairGene EditingHumans

Identifiers

PMID38521763
PMCPMC10960832
OpenAlexW4393112090

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.